U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX155198: GSM950282: Nanoarchaeum equitans sRNAs; Nanoarchaeum equitans; RNA-Seq
5 ILLUMINA (Illumina HiSeq 2000) runs: 17.3M spots, 1.7G bases, 956.7Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Nanoarchaeum equitans small RNA analysis
PRJNA169032 • SRP013830 • All experiments • All runs
show Abstracthide Abstract
We report the profiling of small RNAs from Nanoarchaeum equitans by high-throughput sequencing. Over 16 million Illumina HiSeq 2000 reads were mapped to the 490,885-nucleotide small genome of Nanoarchaeum equitans. The mapping allowed the identification of highly abundant C/D box sRNAs and crRNAs in an organism that has to import its nucleotides from Ignicoccus hospitalis. The precursor tRNA halves of trans-spliced tRNAs were identified. Overall design: Analysis of small RNA from one sample of Nanoarchaeum equitans.
Sample: Nanoarchaeum equitans sRNAs
SAMN01055339 • SRS346405 • All experiments • All runs
Organism: Nanoarchaeum equitans
Library:
Name: GSM950282: Nanoarchaeum equitans sRNAs
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Spot descriptor:
1  forward

Experiment attributes:
GEO Accession: GSM950282
Links:
External link:
Runs: 5 runs, 17.3M spots, 1.7G bases, 956.7Mb
Run# of Spots# of BasesSizePublished
SRR5145744,000,000388M219.2Mb2012-06-21
SRR5145754,000,000388M219.1Mb2012-06-21
SRR5145764,000,000388M222.6Mb2012-06-21
SRR5145774,000,000388M225Mb2012-06-21
SRR5145781,253,447121.6M70.8Mb2012-06-21

ID:
196382

Supplemental Content

Related information

Search details

See more...

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...