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SRX24381210: GSM8239264: WTCP 2; Staphylococcus aureus; Tn-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 19.6M spots, 999.3M bases, 434.1Mb downloads

External Id: GSM8239264_r1
Submitted by: Eric Skaar, Pathology, Microbiology, and Immunology, Vanderbilt University Medical Center
Study: Tn-seq of Staphylococcus aureus exposed to Calprotectin
show Abstracthide Abstract
The host protein calprotectin inhibits the growth of a variety of bacterial pathogens through metal sequestration in a process known as 'nutritional immunity'. Staphylococcus aureus growth is inhibited by calprotectin in vitro and calprotectin is localized in vivo to staphylococcal abscesses during infection. However, the staphylococcal adaptations that provide defense against nutritional immunity and the role of metal-responsive regulators are not fully characterized. In this work, we define the transcriptional response of S. aureus and the role of the metal-responsive regulators, Zur, Fur, and MntR, in response to metal limitation by calprotectin exposure. Additionally, we identified genes affecting the fitness of S. aureus during metal limitation through a Transposon sequencing (Tn-seq) approach. Loss of function mutations in clpP, which encodes a proteolytic subunit of the ATP-dependent Clp protease, demonstrate reduced fitness of S. aureus to the presence of calprotectin. ClpP contributes to pathogenesis in vivo in a calprotectin-dependent manner. These studies establish a critical role for ClpP to combat metal limitation by calprotectin and reveal the genes required for S. aureus to outcompete the host for metals. Overall design: This study sought to uncover genes that affect the fitness of S. aureus when the bacteria experience calprotectin-mediated metal starvation by performing a genome-wide Tn-seq screen on bacteria grown in the presence of WTCP or ?s1CP
Library:
Name: GSM8239264
Instrument: Illumina HiSeq 2500
Strategy: Tn-Seq
Source: GENOMIC
Selection: other
Layout: SINGLE
Construction protocol: genomic DNA (gDNA) from S. aureus cultures was extracted using the DNeasy Blood and Tissue Kit (QIAGEN). All DNA samples were then normalized to 100 ng/mL in ultra-pure water. Samples were then processed using the DTR gel filtration cartridges (Edge Biosystems Inc 42453) using the manufacturer's recommendations. The sample (50 mL) was sheared in Covaris tubes using the Covaris LE220 instrument to generate 350bp fragments. Sheared DNA was treated with terminal deoxytransferase to generate a 3' poly C-tail sequence, and two rounds of nested PCR were employed to amplify transposon junction regions. These products were multiplexed using 8-bp indexing primers and sequenced on the Illumina Hi-Seq 2500 at Tufts University Core Facility. Transposon sequencing
Runs: 1 run, 19.6M spots, 999.3M bases, 434.1Mb
Run# of Spots# of BasesSizePublished
SRR2881814519,593,428999.3M434.1Mb2024-05-14

ID:
32696078

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