SRX11247961: Whole genome sequence of Mycobacterium gordonae subsp. camsnse subsp. nov isolated from a skin infection
1 PACBIO_SMRT (PacBio RS II) run: 7.7M spots, 1.2G bases, 780.3Mb downloads
Design: The strain X7091 genome was sequenced using a PacBio RS II platform and Illumina HiSeq 4000 platform at the Beijing Genomics Institute(BGI, Shenzhen, China). Four SMRT cells Zero-Mode Waveguide arrays of sequencing, were used by the PacBio platform to generate the subreads set.PacBio subreads (length < 1 kb) were removed. The program Pbdagcon was used for selfcorrection. Draft genomic unitigs, which are uncontested groups of fragments, were assembled using the Celera Assembler against a highquality corrected circular consensus sequence subreads set. To improve the accuracy of the genome sequences, GATK and SOAP tool packages were used to make single-base corrections.
Submitted by: Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College
Study:
Whole genome sequence of Mycobacterium gordonae subsp. camsnse subsp. novshow Abstracthide AbstractDescription of Mycobacterium gordonae subsp. camsnse subsp. nov
Sample:
Whole genome sequence of Mycobacterium gordonae subsp. camsnse subsp. nov isolated from a skin infectionLibrary:
Name: X7091
Instrument: PacBio RS II
Strategy: WGS
Source: GENOMIC
Selection: PCR
Layout: PAIRED
Runs:
1 run, 7.7M spots, 1.2G bases, 780.3Mb