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SRX10237708: GSM5134401: NAC_Female_Rat37_AS; Rattus norvegicus; RNA-Seq
1 ILLUMINA (Illumina NovaSeq 6000) run: 36.6M spots, 11G bases, 3.2Gb downloads

Submitted by: NCBI (GEO)
Study: Transcriptional responses to maternal trichloroethylene and/or N-acetyl cysteine exposure in Wistar rat placental tissue
show Abstracthide Abstract
Trichloroethylene (TCE) is a persistent and pervasive environmental contaminant. N-acetyl cysteine (NAC) is an antioxidant that may reduce TCE effects. Pregnant Wistar rats were exposed to 480 mg TCE mg/kg/day, 200 mg/kg/day NAC or co-exposure with both chemicals via ingestion (mini vanilla wafer) on gestation days 6-16 (tissue collection day). TCE- and/or NAC-induced changes to gene expression were evaluated in male and female rat placentae. Overall design: Timed-pregnant Wistar rats were exposed to vehicle control (PBS), trichloroethylene (TCE), N-acetyl cysteine (NAC) or co-exposure with both chemicals via ingestion (treated mini vanilla wafer) on gestation days 6-16 (tissue collection day). The doses were as follows: 480 mg TCE mg/kg/day, 200 mg/kg/day NAC or both doses together. There were 6 batches of rats (N=6) with 4 rats in each batch and 1 rat assigned to each treatment group (total of 24 dams). RNA was isolated from one male and one female placenta from each respective dam and sequenced (24 male and 24 female placental tissue samples). Differential gene expression comparisons were made between each treatment group and control tissues stratified by sex.
Sample: NAC_Female_Rat37_AS
SAMN18138786 • SRS8379102 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was extracted from placental tissue using the RNeasy Plus Mini Kit (Qiagen) following the manufacturer's recommended protocol with a modification. A FastPrep-24 tissue lyser (MP Biomedicals; Solon, OH, USA) was utilized prior to the gDNA elimination step to achieve maximum quality tissue homogenization. DNA was extracted from placental using the NucleoSpin Tissue kit (Machery-Nagel; Düren, Germany) according to the manufacture's recommended protocol. RNA and DNA concentrations were determined using a NanoDrop 2000 Spectrophotometer (Thermo Fisher Scientific; Waltham, MA, USA). Isolated nucleic acids were subsequently stored at -80°C until further processing. RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM5134401
Links:
Runs: 1 run, 36.6M spots, 11G bases, 3.2Gb
Run# of Spots# of BasesSizePublished
SRR1385651136,587,92511G3.2Gb2022-06-02

ID:
13365284

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