target capture of Plethodon species: montanus_SG_Fresh_RCB1045 - SRA

SRX9856522: target capture of Plethodon species: montanus_SG_Fresh_RCB1045
1 ILLUMINA (Illumina NovaSeq 6000) run: 12.1M spots, 3.6G bases, 1.1Gb downloads

Design: target capture array using custom probes designed for transcriptome of Plethodon cinereus. Mainly targetted exons, but also vision, hearing, and immune related genes. Chose one random exon per locus for 2200+ loci

Submitted by: National Museum of Natural History

Study: Investigating species declines in woodland salamanders

PRJNA692381 • SRP301912 • All experiments • All runs

show Abstracthide Abstract

We use genomic data from three time periods to quantify genomic declines in woodland salamanders (Plethodon)

Sample: montanus_SG_Fresh_RCB1045

SAMN17321683 • SRS8037636 • All experiments • All runs

Organism: Plethodon montanus

Library:

Name: montanus_SG_Fresh_RCB1045

Instrument: Illumina NovaSeq 6000

Strategy: Targeted-Capture

Source: GENOMIC

Selection: RANDOM PCR

Layout: PAIRED

Runs: 1 run, 12.1M spots, 3.6G bases, 1.1Gb

Run	# of Spots	# of Bases	Size	Published
SRR13442958	12,050,918	3.6G	1.1Gb	2023-03-01

ID:: 12903698

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Search details

Recent activity