U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX4890524: GSM3430795: G1_IFNgamma_ControlASO_50_Kidney_J2; Mus musculus; RNA-Seq
1 ILLUMINA (NextSeq 500) run: 11.1M spots, 810.7M bases, 351.4Mb downloads

Submitted by: NCBI (GEO)
Study: Evaluation of APOL1 ASO in a novel model of APOL1-associated renal disease
show Abstracthide Abstract
African Americans develop end-stage renal disease at a higher rate compared to European Americans due to two polymorphisms (G1 and G2 risk variants) in the apolipoprotein L1 (APOL1) gene that are common in people of African ancestry. Not all homozygous risk allele carriers, however, develop renal disease suggesting that modifying factors (“second hits”) are required. Although the compelling genetic evidence provides an exciting opportunity for personalized medicine in chronic kidney disease (CKD), drug discovery efforts have been greatly hindered by the fact that APOL1 expression is limited to humans and select nonhuman primates. We describe a novel physiologically-relevant genomic mouse model of APOL1-associated renal disease that expresses human APOL1 from the endogenous human promoter, resulting in expression in similar tissues and at similar relative levels as humans. While naïve genomic APOL1 transgenic mice did not exhibit a renal disease phenotype, a single administration of IFN? was sufficient to robustly induce proteinuria only in APOL1 G1 transgenic mice, despite inducing kidney APOL1 expression in both G0 and G1 mice, serving as a clinically-relevant “second hit.” We also report on the discovery of the first APOL1 inhibitor, IONIS-APOL1Rx, a Generation 2.5 antisense oligonucleotide (ASO) targeting APOL1 mRNA. Treatment of APOL1 G1 mice with IONIS-APOL1Rx prior to IFN? challenge robustly and dose-dependently inhibited kidney and liver APOL1 expression and protected against IFN?-induced proteinuria, indicating that the disease-relevant cell types are sensitive to ASO treatment. Collectively, these data suggest that IONIS-APOL1Rx may be an effective therapeutic for APOL1 nephropathies and warrants further development. Overall design: APOL1 G0 and G1 transgenic mice were dosed with PBS (vehicle), 50 mg/kg control ASO (non-targeting ASO of the same chemistry as targeting ASO) or 50 mg/kg APOL1 ASO once/week for 4 weeks. One day after the last ASO dose, cohorts were divided and half were challenged with PBS and half were challenged with IFNgamma. Kidney and Liver tissues were harvested 48 hours after challenge for analysis. N=3-4 per group.
Sample: G1_IFNgamma_ControlASO_50_Kidney_J2
SAMN10245310 • SRS3938079 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: NextSeq 500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: SINGLE
Construction protocol: Tissues were homogenized in Guanidine Isothiocyanate solution (Life Technologies) containing 8% β-mercaptoethanol (Sigma Aldrich) and total RNA was isolated using RNeasy 96 Kits (Qiagen) according to the manufacturer's recommendations. Digital gene expression (DGE) was performed by sequencing fragment libraries from purified total RNA as described previously (Patro et al., Nat Methods, 2017) using the QuantSeq 3' mRNA-Seq Library Prep Kit from Lexogen.
Experiment attributes:
GEO Accession: GSM3430795
Links:
Runs: 1 run, 11.1M spots, 810.7M bases, 351.4Mb
Run# of Spots# of BasesSizePublished
SRR806101211,077,082810.7M351.4Mb2018-10-17

ID:
6590963

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...