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SRX2409669: GSM2422350: KSHV-VLV (microRNA); Homo sapiens; Human gammaherpesvirus 8; miRNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 558,730 spots, 27.9M bases, 12.5Mb downloads

Submitted by: NCBI (GEO)
Study: Virus-like vesicles of Kaposi’s Sarcoma-Associated Herpesvirus activate lytic replication through triggering differentiation signaling (microRNA)
show Abstracthide Abstract
Virus-like vesicles (VLVs) are membrane derived cellular vesicles that resemble native envelope viruses in organization and conformation, but lack viral capsid and/or genome. During productive virus infection, both infectious virions and non-infectious VLVs are produced and released into the extracellular space. VLVs have been shown to play a role in intercellular communication and in facilitating virus infection. The study of VLVs in the context of gammaherpesvirus infection has been largely restricted due to the technical difficulty of separating VLVs and virions. Here we report a strategy for using a KSHV mutant deficient in capsid assembly to isolate VLVs during infection. Using Mass Spectrometry analysis, we identified that VLVs contain viral glycoproteins required for cellular entry, and tegument proteins involved in regulating lytic replication. Functional analysis showed that VLVs could activate the RTA promoter, the lytic switch for KSHV, and further induce KSHV lytic gene expression from latency. We used RNA sequencing to do a genome-wide analysis of cellular responses triggered by VLVs, and revealed that PRDM1, a master regulator in cell differentiation, was up-regulated. Our data shows that VLVs play an important role in promoting KSHV lytic replication by inducing PRDM1 expression which activates the RTA promoter. Our study significantly extends our current understanding of VLVs. Overall design: Analyze microRNA in KSHV VLVs
Sample: KSHV-VLV (microRNA)
SAMN06128299 • SRS1847883 • All experiments • All runs
Organism: Homo sapiens
Library:
Instrument: Illumina HiSeq 2000
Strategy: miRNA-Seq
Source: TRANSCRIPTOMIC
Selection: size fractionation
Layout: SINGLE
Construction protocol: Trizol for total RNA, and then gel purify microRNA TruSeq Small RNA Library Prep Kit
Experiment attributes:
GEO Accession: GSM2422350
Links:
Runs: 1 run, 558,730 spots, 27.9M bases, 12.5Mb
Run# of Spots# of BasesSizePublished
SRR5092836558,73027.9M12.5Mb2017-05-04

ID:
3501704

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