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SRX1322485: GSM1904947: E110019_LB_0.5_BR1_2; Escherichia coli E110019; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 23.7M spots, 4.8G bases, 3.1Gb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Comparative transcriptomics of the virulence regulons of enteropathogenic Escherichia coli from diverse phylogenomic lineages
PRJNA298339 • SRP064662 • All experiments • All runs
show Abstracthide Abstract
Global transcriptional analysis of eleven EPEC strains, including the most frequently studied strains used in laboratory studies investigating EPEC virulence mechanisms. Overall design: RNA sequencing was performed on the four EPEC prototype strains during growth in laboratory media and conditions that have been previously demonstrated to induce expression of EPEC virulence factors.
Sample: E110019_LB_0.5_BR1_2
SAMN04158450 • SRS1109928 • All experiments • All runs
Organism: Escherichia coli E110019
Library:
Instrument: Illumina HiSeq 2000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated from cells grown in LB or DMEM using the Ribopure Bacteria kit (Ambion) and contaminating DNA was removed using the Ribopure Dnase I and also the Turbo DNA-free kit (Ambion). RNA libraries were prepared for sequencing using standard Illumina protocols
Experiment attributes:
GEO Accession: GSM1904947
Links:
Runs: 1 run, 23.7M spots, 4.8G bases, 3.1Gb
Run# of Spots# of BasesSizePublished
SRR260173323,708,2354.8G3.1Gb2017-05-10

ID:
1887162

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