U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SRX117693: GSM865709: PIF4 ChIP-Seq; Arabidopsis thaliana; ChIP-Seq
1 ILLUMINA (Illumina Genome Analyzer IIx) run: 39.5M spots, 1.4G bases, 899.1Mb downloads

Submitted by: Gene Expression Omnibus (GEO)
Study: Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses [ChIP-seq]
show Abstracthide Abstract
Plant growth is coordinately regulated by environmental and hormonal signals. Brassinosteroid (BR) plays essential roles in growth regulation by light and temperature, but the interactions between BR and these environmental signals remain poorly understood at the molecular level. Here, we show that direct interaction between the dark- and heat-activated transcription factor phytochrome-interacting factor4 (PIF4) and the BR-activated transcription factor BZR1 integrates the hormonal and environmental signals. BZR1 and PIF4 interact with each other in vitro and in vivo, bind to nearly two thousand common target genes, and synergistically regulate many of these target genes, including the PRE family HLH factors required for promoting cell elongation. Genetic analysis indicates that BZR1 and PIFs are interdependent in promoting cell elongation in response to BR, darkness, or heat. These results show that the BZR1-PIF4 interaction controls a core transcription network, allowing plant growth co-regulation by the steroid and environmental signals. Overall design: Genome-wide identification of PIF4 binding sites in etiolated Arabidopsis seedlings.
Sample: PIF4 ChIP-Seq
SAMN00778981 • SRS290225 • All experiments • All runs
Library:
Name: GSM865709: PIF4 ChIP-Seq
Instrument: Illumina Genome Analyzer IIx
Strategy: ChIP-Seq
Source: GENOMIC
Selection: ChIP
Layout: SINGLE
Spot descriptor:
forward

Experiment attributes:
GEO Accession: GSM865709
Links:
External link:
Runs: 1 run, 39.5M spots, 1.4G bases, 899.1Mb
Run# of Spots# of BasesSizePublished
SRR40205939,463,5651.4G899.1Mb2012-07-09

ID:
135529

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...