U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

ERX8516411: Illumina NovaSeq 6000 paired end sequencing; Raw reads: R538
1 ILLUMINA (Illumina NovaSeq 6000) run: 65.6M spots, 19.7G bases, 5.7Gb downloads

Design: unspecified
Submitted by: University of Tuscia
Study: De novo transcriptome assembly and annotation for gene discovery in Salamandra salamandra at the larval stage
show Abstracthide Abstract
Dispersal is a key process in ecology and evolutionary biology, as it shapes biodiversity patterns over space and time. Mounting evidence is showing that attitude to disperse is often unevenly distributed among individuals within animal populations, and that individual personality and early life experience can have pivotal roles in the shaping of this attitude. Here, we contribute to the study of the genetic underpinnings of dispersal-related behavioral variation by assembling and annotating the first de novo transcriptome of the brain tissue of Salamandra salamandra. Although dispersal occurs mostly during the post-metamorphic terrestrial life stage in this species, variation in dispersal-related personality traits is already evident at the aquatic larval stage, making it an excellent candidate species for studies of carry-over effects. We employed a structured pipeline to de-novo assemble and annotate transcripts from RNA-Seq in a set of individual representatives of distinct behavioral profiles.
Sample: R538
SAMEA13173763 • ERS10777320 • All experiments • All runs
Library:
Instrument: Illumina NovaSeq 6000
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Runs: 1 run, 65.6M spots, 19.7G bases, 5.7Gb
Run# of Spots# of BasesSizePublished
ERR897137165,603,65619.7G5.7Gb2022-08-01

ID:
23522821

Supplemental Content

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...