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DRX389974: Illumina HiSeq 4000 paired end sequencing of SAMD00534846
1 ILLUMINA (Illumina HiSeq 4000) run: 151,526 spots, 27.6M bases, 12.5Mb downloads

Submitted by: OKAYAMA
Study: Genotyping-by-sequencing of melon genetic resources
show Abstracthide Abstract
This project aimed to select the World Melon Core Collection based on genetic variation and population structure characterized by genotyping-by-sequencing for melon genetic resources deposited in the National Agriculture and Food Research Organization (NARO) Genebank, Japan.
Sample: 333
SAMD00534846 • DRS272458 • All experiments • All runs
Organism: Cucumis melo
Library:
Instrument: Illumina HiSeq 4000
Strategy: OTHER
Source: GENOMIC
Selection: Reduced Representation
Layout: PAIRED
Construction protocol: Modified Genotyping-by-sequencing (Elshire et al. 2011) strategy, using Hsp92II or NlaIII restriction enzyme to digest genomic DNA, followed by ligation of custom sequencing adapters including sample-specific barcodes, PCR amplification, and pooling of libraries from 192 samples into the same sequencing run.
Spot descriptor:
forward102  reverse

Pipeline: show...hide...
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1NIL
Runs: 1 run, 151,526 spots, 27.6M bases, 12.5Mb
Run# of Spots# of BasesSizePublished
DRR404364151,52627.6M12.5Mb2023-01-01

ID:
26010884

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