7OY7: Crystal structure of a trapped Pab-AGOG/double-standed DNA covalent intermediate (DNA containing cytosine opposite to lesion)

PDB ID: 7OY7Download
MMDB ID: 217650
PDB Deposition Date: 2021/6/23
Updated in MMDB: 2022/07
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Pyrococcus abyssi GE5▼
Similar Structures:
Biological Unit for 7OY7: trimeric; determined by author and by software (PISA)
Molecular Components in 7OY7
Label Count Molecule
Protein (1 molecule)
1
N-glycosylase/dna Lyase
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*tp*tp*tp*(ped)p*tp*tp*tp*cp*t)-3')
Molecule annotation
1
DNA (5'-d(*ap*gp*ap*ap*ap*cp*ap*ap*a)-3')
Molecule annotation
Chemical and Non-standard biopolymers (1 molecule)
1
1
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303