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    LOC9320944 uncharacterized protein C18orf8 [ Arabidopsis lyrata subsp. lyrata ]

    Gene ID: 9320944, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC9320944
    Gene description
    uncharacterized protein C18orf8
    Locus tag
    ARALYDRAFT_897410
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Arabidopsis lyrata subsp. lyrata (sub-species: lyrata)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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    Genomic context

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    See LOC9320944 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    101 current v.1.0 (GCF_000004255.2) Unplaced Scaffold NW_003302553.1 (4849165..4854977)

    NW_003302553.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9318826 Neighboring gene S-locus-specific glycoprotein Neighboring gene uncharacterized LOC110230272 Neighboring gene kinesin-like protein KIN-7K, chloroplastic Neighboring gene calcium load-activated calcium channel

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003302553 Unplaced Scaffold Reference v.1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of autophagy IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Mon1-Ccz1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in lysosomal membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein C18orf8

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Arabidopsis lyrata subsp. lyrata Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference v.1.0 Primary Assembly

    Genomic

    1. NW_003302553.1 Reference v.1.0 Primary Assembly

      Range
      4849165..4854977
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021032566.1 → XP_020888225.1  uncharacterized protein C18orf8 isoform X2

      UniProtKB/TrEMBL
      D7KZN3
      Conserved Domains (3) summary
      sd00039
      Location:34 → 68
      7WD40; WD40 repeat [structural motif]
      pfam07035
      Location:516 → 663
      Mic1; Colon cancer-associated protein Mic1-like
      pfam12894
      Location:37 → 124
      ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

    2. XM_021032567.1 → XP_020888226.1  uncharacterized protein C18orf8 isoform X2

      UniProtKB/TrEMBL
      D7KZN3
      Conserved Domains (3) summary
      sd00039
      Location:34 → 68
      7WD40; WD40 repeat [structural motif]
      pfam07035
      Location:516 → 663
      Mic1; Colon cancer-associated protein Mic1-like
      pfam12894
      Location:37 → 124
      ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

    3. XM_021032563.1 → XP_020888222.1  uncharacterized protein C18orf8 isoform X1

      UniProtKB/TrEMBL
      D7KZN3
      Conserved Domains (3) summary
      sd00039
      Location:35 → 69
      7WD40; WD40 repeat [structural motif]
      pfam07035
      Location:517 → 664
      Mic1; Colon cancer-associated protein Mic1-like
      pfam12894
      Location:38 → 125
      ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

    4. XM_021032565.1 → XP_020888224.1  uncharacterized protein C18orf8 isoform X1

      UniProtKB/TrEMBL
      D7KZN3
      Conserved Domains (3) summary
      sd00039
      Location:35 → 69
      7WD40; WD40 repeat [structural motif]
      pfam07035
      Location:517 → 664
      Mic1; Colon cancer-associated protein Mic1-like
      pfam12894
      Location:38 → 125
      ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain

    5. XM_021032564.1 → XP_020888223.1  uncharacterized protein C18orf8 isoform X1

      UniProtKB/TrEMBL
      D7KZN3
      Conserved Domains (3) summary
      sd00039
      Location:35 → 69
      7WD40; WD40 repeat [structural motif]
      pfam07035
      Location:517 → 664
      Mic1; Colon cancer-associated protein Mic1-like
      pfam12894
      Location:38 → 125
      ANAPC4_WD40; Anaphase-promoting complex subunit 4 WD40 domain
    Nucleotide Protein
    Heading Accession and Version

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