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    Phum_PHUM289660 DEAD box ATP-dependent RNA helicase, putative [ Pediculus humanus corporis (human body louse) ]

    Gene ID: 8229634, updated on 6-Jan-2024

    Summary

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    Gene symbol
    Phum_PHUM289660
    Gene description
    DEAD box ATP-dependent RNA helicase, putative
    Locus tag
    Phum_PHUM289660
    See related
    VectorBase:PHUM289660
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Pediculus humanus corporis (strain: USDA, sub-species: corporis)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Paraneoptera; Psocodea; Phthiraptera; Anoplura; Pediculidae; Pediculus
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    Genomic context

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    See Phum_PHUM289660 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    7

    NW_002987279.1Genomic Context describing neighboring genes Neighboring gene proteasome subunit alpha type, putative Neighboring gene ATP synthase subunit alpha, putative Neighboring gene tRNA-Gly Neighboring gene Ribosome-binding factor A, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_002987279.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables RNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in gamete generation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in P granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DEAD box ATP-dependent RNA helicase, putative
    XP_002427009.1
    • encoded by transcript Phum_PHUM289660-RA

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_002987279.1 Reference assembly

      Range
      48998..51141
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002426964.1 → XP_002427009.1  DEAD box ATP-dependent RNA helicase, putative [Pediculus humanus corporis]

      See identical proteins and their annotated locations for XP_002427009.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      E0VLL5
      Conserved Domains (3) summary
      smart00487
      Location:146 → 347
      DEXDc; DEAD-like helicases superfamily
      cd00268
      Location:133 → 344
      DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
      pfam00271
      Location:367 → 476
      Helicase_C; Helicase conserved C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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