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    lds transcription termination factor lodestar [ Drosophila virilis ]

    Gene ID: 6633148, updated on 17-Oct-2024

    Summary

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    Gene symbol
    lds
    Gene description
    transcription termination factor lodestar
    Locus tag
    Dvir_GJ10137
    See related
    EnsemblRapid:LOC6633148
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila virilis
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila
    Also known as
    GJ10137; GJ10137-PA
    Orthologs
    fruit fly all
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    Genomic context

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    See lds in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    103 current DvirRS2 (GCF_003285735.1) Unplaced Scaffold NW_022587552.1 (7041118..7045331, complement)

    NW_022587552.1Genomic Context describing neighboring genes Neighboring gene nuclear export factor 4 Neighboring gene CD98 heavy chain Neighboring gene transcription factor doublesex Neighboring gene transketolase-like protein 2 Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene transfer RNA tyrosine (anticodon GUA)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_022587552 Unplaced Scaffold Reference DvirRS2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    transcription termination factor 2
    Names
    Dvir\GJ10137
    Dvir\GJ10137-PA
    dvir_GLEANR_10083

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila virilis Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference DvirRS2

    Genomic

    1. NW_022587552.1 Reference DvirRS2

      Range
      7041118..7045331 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_002056563.3 → XP_002056599.1  transcription termination factor 2

      See identical proteins and their annotated locations for XP_002056599.1

      UniProtKB/TrEMBL
      B4M500
      Related
      XP_002056599.1, XM_002056563.3
      Conserved Domains (3) summary
      cd00046
      Location:466 → 640
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      cd00079
      Location:887 → 1015
      HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
      pfam00176
      Location:449 → 811
      SNF2_N; SNF2 family N-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version

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