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    pcdhga3.L protocadherin gamma subfamily A, 3 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 379294, updated on 4-Nov-2024

    Summary

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    Official Symbol
    pcdhga3.L
    Official Full Name
    protocadherin gamma subfamily A, 3 L homeolog
    Primary source
    Xenbase:XB-GENE-17343226
    Locus tag
    XELAEV_18017060mg
    See related
    EnsemblRapid:ENSXLAG00005000425 AllianceGenome:Xenbase:XB-GENE-17343226
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    pcdhga2
    Summary
    Predicted to enable calcium ion binding activity. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See pcdhga3.L in Genome Data Viewer
    Location:
    chromosome: 3L
    Exon count:
    29
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3L NC_054375.1 (34027940..34307075, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3L NC_030728.1 (21118696..21207378, complement)

    Chromosome 3L - NC_054375.1Genomic Context describing neighboring genes Neighboring gene FCH and double SH3 domains 1 L homeolog Neighboring gene RELT-like 2 L homeolog Neighboring gene protocadherin gamma-C5-like Neighboring gene protocadherin gamma-C5-like Neighboring gene U2 spliceosomal RNA Neighboring gene protocadherin gamma-B5-like Neighboring gene proteinase-activated receptor 3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC53493

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    protocadherin gamma subfamily A, 3 L homeolog
    Names
    pcdh-gamma-a3
    protocadherin gamma subfamily A, 2
    protocadherin gamma-B5 pseudogene
    protocadherin gamma-C5 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001086138.1 → NP_001079607.1  protocadherin gamma subfamily A, 3 L homeolog

      See identical proteins and their annotated locations for NP_001079607.1

      Status: PROVISIONAL

      Source sequence(s)
      BC045118
      UniProtKB/TrEMBL
      Q6PF44, Q7ZX86
      Conserved Domains (4) summary
      cd11304
      Location:246 → 346
      Cadherin_repeat; Cadherin tandem repeat domain
      pfam08266
      Location:29 → 110
      Cadherin_2; Cadherin-like
      pfam15974
      Location:809 → 906
      Cadherin_tail; Cadherin C-terminal cytoplasmic tail, catenin-binding region
      pfam16492
      Location:687 → 785
      Cadherin_C_2; Cadherin cytoplasmic C-terminal

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054375.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      34027940..34307075 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041584915.1 → XP_041440849.1  protocadherin gamma subfamily A, 3 L homeolog isoform X36

      UniProtKB/TrEMBL
      A0A8J1MGK9, A0A974HS28
      Conserved Domains (1) summary
      cd11304
      Location:248 → 345
      Cadherin_repeat; Cadherin tandem repeat domain

    2. XM_041584909.1 → XP_041440843.1  protocadherin gamma subfamily A, 3 L homeolog isoform X31

      UniProtKB/TrEMBL
      A0A8J1MH44, A0A974HS28
      Conserved Domains (1) summary
      cd11304
      Location:248 → 345
      Cadherin_repeat; Cadherin tandem repeat domain

    3. XM_041584907.1 → XP_041440841.1  protocadherin gamma subfamily A, 3 L homeolog isoform X29

      UniProtKB/TrEMBL
      A0A8J1MHI3, A0A974HSN6
      Conserved Domains (1) summary
      cd11304
      Location:250 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    4. XM_041584912.1 → XP_041440846.1  protocadherin gamma subfamily A, 3 L homeolog isoform X33

      UniProtKB/TrEMBL
      A0A8J1MHI7, A0A974DAI6
      Conserved Domains (1) summary
      cd11304
      Location:458 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    5. XM_041584906.1 → XP_041440840.1  protocadherin gamma subfamily A, 3 L homeolog isoform X28

      UniProtKB/TrEMBL
      A0A8J1MIF5, A0A974DAI6
      Conserved Domains (1) summary
      cd11304
      Location:458 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    6. XM_041584914.1 → XP_041440848.1  protocadherin gamma subfamily A, 3 L homeolog isoform X35

      UniProtKB/TrEMBL
      A0A8J1MH49, A0A974DCH8
      Conserved Domains (1) summary
      cd11304
      Location:249 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    7. XM_041584911.1 → XP_041440845.1  protocadherin gamma subfamily A, 3 L homeolog isoform X32

      UniProtKB/TrEMBL
      A0A8J1MIF9, A0A974DBS9
      Conserved Domains (1) summary
      cd11304
      Location:249 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    8. XM_041584916.1 → XP_041440850.1  protocadherin gamma subfamily A, 3 L homeolog isoform X37

      UniProtKB/TrEMBL
      A0A8J1MIG5, A0A974DAH6
      Conserved Domains (1) summary
      cd11304
      Location:249 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    9. XM_041584908.1 → XP_041440842.1  protocadherin gamma subfamily A, 3 L homeolog isoform X30

      UniProtKB/TrEMBL
      A0A8J1MGK3, A0A974DAH6
      Conserved Domains (1) summary
      cd11304
      Location:249 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    10. XM_041584903.1 → XP_041440837.1  protocadherin gamma subfamily A, 3 L homeolog isoform X24

      UniProtKB/TrEMBL
      A0A8J1MGJ9, A0A974DAJ7
      Conserved Domains (1) summary
      cd11304
      Location:249 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    11. XM_041584891.1 → XP_041440825.1  protocadherin gamma subfamily A, 3 L homeolog isoform X5

      UniProtKB/TrEMBL
      A0A8J1MIE1, A0A974DD11
      Conserved Domains (1) summary
      cd11304
      Location:267 → 364
      Cadherin_repeat; Cadherin tandem repeat domain

    12. XM_041584890.1 → XP_041440824.1  protocadherin gamma subfamily A, 3 L homeolog isoform X3

      UniProtKB/TrEMBL
      A0A8J1MGI5, A0A974DD11
      Conserved Domains (1) summary
      cd11304
      Location:267 → 364
      Cadherin_repeat; Cadherin tandem repeat domain

    13. XM_041584918.1 → XP_041440852.1  protocadherin gamma subfamily A, 3 L homeolog isoform X39

      UniProtKB/TrEMBL
      A0A8J1MGL2, A0A974D944
      Conserved Domains (1) summary
      cd11304
      Location:245 → 345
      Cadherin_repeat; Cadherin tandem repeat domain

    14. XM_041584917.1 → XP_041440851.1  protocadherin gamma subfamily A, 3 L homeolog isoform X38

      UniProtKB/TrEMBL
      A0A8J1MHJ1, A0A974D944
      Conserved Domains (1) summary
      cd11304
      Location:245 → 345
      Cadherin_repeat; Cadherin tandem repeat domain

    15. XM_041584900.1 → XP_041440834.1  protocadherin gamma subfamily A, 3 L homeolog isoform X16

      UniProtKB/TrEMBL
      A0A8J1MGJ6
      Conserved Domains (1) summary
      cd11304
      Location:246 → 345
      Cadherin_repeat; Cadherin tandem repeat domain

    16. XM_041584899.1 → XP_041440833.1  protocadherin gamma subfamily A, 3 L homeolog isoform X14

      UniProtKB/TrEMBL
      A0A8J1MH36
      Conserved Domains (1) summary
      cd11304
      Location:246 → 345
      Cadherin_repeat; Cadherin tandem repeat domain

    17. XM_041584896.1 → XP_041440830.1  protocadherin gamma subfamily A, 3 L homeolog isoform X11

      UniProtKB/TrEMBL
      A0A8J1MIE6
      Conserved Domains (1) summary
      cd11304
      Location:459 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    18. XM_041584892.1 → XP_041440826.1  protocadherin gamma subfamily A, 3 L homeolog isoform X7

      UniProtKB/TrEMBL
      A0A8J1MHG9
      Conserved Domains (1) summary
      cd11304
      Location:459 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    19. XM_041584893.1 → XP_041440827.1  protocadherin gamma subfamily A, 3 L homeolog isoform X8

      UniProtKB/TrEMBL
      A0A8J1MGI9
      Conserved Domains (1) summary
      cd11304
      Location:247 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    20. XM_041584901.1 → XP_041440835.1  protocadherin gamma subfamily A, 3 L homeolog isoform X18

      UniProtKB/TrEMBL
      A0A8J1MIF1, A0A974HSH6
      Conserved Domains (1) summary
      cd11304
      Location:247 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    21. XM_041584897.1 → XP_041440831.1  protocadherin gamma subfamily A, 3 L homeolog isoform X12

      UniProtKB/TrEMBL
      A0A8J1MHH5, A0A974HS21
      Conserved Domains (1) summary
      cd11304
      Location:458 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    22. XM_041584913.1 → XP_041440847.1  protocadherin gamma subfamily A, 3 L homeolog isoform X34

      UniProtKB/TrEMBL
      A0A8J1MGK7, A0A974HSM9
      Conserved Domains (1) summary
      cd11304
      Location:243 → 343
      Cadherin_repeat; Cadherin tandem repeat domain

    23. XM_041584905.1 → XP_041440839.1  protocadherin gamma subfamily A, 3 L homeolog isoform X27

      UniProtKB/TrEMBL
      A0A8J1MGK1, A0A974HSM9
      Conserved Domains (1) summary
      cd11304
      Location:243 → 343
      Cadherin_repeat; Cadherin tandem repeat domain

    24. XM_041584922.1 → XP_041440856.1  protocadherin gamma subfamily A, 3 L homeolog isoform X43

      UniProtKB/TrEMBL
      A0A8J1MHJ6, A0A974DCL8
      Conserved Domains (1) summary
      cd11304
      Location:247 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    25. XM_041584921.1 → XP_041440855.1  protocadherin gamma subfamily A, 3 L homeolog isoform X42

      UniProtKB/TrEMBL
      A0A8J1MIG9, A0A974DCL8
      Conserved Domains (1) summary
      cd11304
      Location:247 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    26. XM_041584920.1 → XP_041440854.1  protocadherin gamma subfamily A, 3 L homeolog isoform X41

      UniProtKB/TrEMBL
      A0A8J1MGL3, A0A974DAH2
      Conserved Domains (1) summary
      cd11304
      Location:458 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    27. XM_041584919.1 → XP_041440853.1  protocadherin gamma subfamily A, 3 L homeolog isoform X40

      UniProtKB/TrEMBL
      A0A8J1MH54, A0A974DAH2
      Conserved Domains (1) summary
      cd11304
      Location:458 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    28. XM_041584898.1 → XP_041440832.1  protocadherin gamma subfamily A, 3 L homeolog isoform X13

      UniProtKB/TrEMBL
      A0A8J1MGJ4, A0A974DAX3
      Conserved Domains (1) summary
      cd11304
      Location:246 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    29. XM_041584894.1 → XP_041440828.1  protocadherin gamma subfamily A, 3 L homeolog isoform X9

      UniProtKB/TrEMBL
      A0A8J1MH31, A0A974DAX3
      Conserved Domains (1) summary
      cd11304
      Location:246 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    30. XM_041584895.1 → XP_041440829.1  protocadherin gamma subfamily A, 3 L homeolog isoform X10

      UniProtKB/TrEMBL
      A0A8J1MGJ0, A0A974DD82
      Conserved Domains (1) summary
      cd11304
      Location:458 → 560
      Cadherin_repeat; Cadherin tandem repeat domain

    31. XM_018250638.2 → XP_018106127.1  protocadherin gamma subfamily A, 3 L homeolog isoform X6

      UniProtKB/TrEMBL
      A0A8J0UEX2, A0A974DCG4
      Related
      ENSXLAP00005001196.1, ENSXLAT00005001231.1

    32. XM_018250637.2 → XP_018106126.1  protocadherin gamma subfamily A, 3 L homeolog isoform X4

      UniProtKB/TrEMBL
      A0A8J0UMY3, A0A974DCG4

    33. XM_041584889.1 → XP_041440823.1  protocadherin gamma subfamily A, 3 L homeolog isoform X2

      UniProtKB/TrEMBL
      A0A8J1MH26, A0A974DBR5
      Conserved Domains (1) summary
      cd11304
      Location:260 → 360
      Cadherin_repeat; Cadherin tandem repeat domain

    34. XM_041584888.1 → XP_041440822.1  protocadherin gamma subfamily A, 3 L homeolog isoform X1

      UniProtKB/TrEMBL
      A0A8J1MGI7, A0A974DBR5
      Conserved Domains (1) summary
      cd11304
      Location:260 → 360
      Cadherin_repeat; Cadherin tandem repeat domain

    35. XM_041584904.1 → XP_041440838.1  protocadherin gamma subfamily A, 3 L homeolog isoform X25

      UniProtKB/TrEMBL
      A0A8J1MH39, Q6PF44
      Conserved Domains (1) summary
      cd11304
      Location:246 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    36. XM_018250643.2 → XP_018106132.1  protocadherin gamma subfamily A, 3 L homeolog isoform X21

      UniProtKB/TrEMBL
      A0A8J0UQY0, Q6PF44
      Related
      ENSXLAP00005001195.1, ENSXLAT00005001230.1

    37. XM_018250645.2 → XP_018106134.1  protocadherin gamma subfamily A, 3 L homeolog isoform X20

      UniProtKB/TrEMBL
      A0A8J0UEX8, Q6PF44

    38. XM_018250648.2 → XP_018106137.1  protocadherin gamma subfamily A, 3 L homeolog isoform X26

      UniProtKB/TrEMBL
      A0A8J0UQY4, Q6PF44

    39. XM_018250647.2 → XP_018106136.1  protocadherin gamma subfamily A, 3 L homeolog isoform X23

      UniProtKB/TrEMBL
      A0A8J0UMX4, Q6PF44
      Related
      ENSXLAP00005001190.1, ENSXLAT00005001225.1

    40. XM_041584902.1 → XP_041440836.1  protocadherin gamma subfamily A, 3 L homeolog isoform X22

      UniProtKB/TrEMBL
      A0A8J1MHH9, Q6PF44
      Conserved Domains (1) summary
      cd11304
      Location:247 → 346
      Cadherin_repeat; Cadherin tandem repeat domain

    41. XM_018250646.2 → XP_018106135.1  protocadherin gamma subfamily A, 3 L homeolog isoform X19

      UniProtKB/TrEMBL
      A0A8J0ULM3, Q6PF44

    42. XM_018250642.2 → XP_018106131.1  protocadherin gamma subfamily A, 3 L homeolog isoform X17

      UniProtKB/TrEMBL
      A0A8J0UMW9

    43. XM_018250641.2 → XP_018106130.1  protocadherin gamma subfamily A, 3 L homeolog isoform X15

      UniProtKB/TrEMBL
      A0A8J0ULL8
    Nucleotide Protein Strain
    Heading Accession and Version

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