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    CHD1L chromodomain helicase DNA binding protein 1 like [ Petromyzon marinus (sea lamprey) ]

    Gene ID: 116939261, updated on 1-Aug-2024

    Summary

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    Gene symbol
    CHD1L
    Gene description
    chromodomain helicase DNA binding protein 1 like
    See related
    EnsemblRapid:ENSPMAG00000036439
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Petromyzon marinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Cyclostomata; Hyperoartia; Petromyzontiformes; Petromyzontidae; Petromyzon
    Orthologs
    human mouse all
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    Genomic context

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    See CHD1L in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    100 current kPetMar1.pri (GCF_010993605.1) 5 NC_046073.1 (18056056..18060868, complement)

    Chromosome 5 - NC_046073.1Genomic Context describing neighboring genes Neighboring gene autism susceptibility gene 2 protein-like Neighboring gene autism susceptibility gene 2 protein homolog Neighboring gene CCA tRNA nucleotidyltransferase 1, mitochondrial-like Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9-like Neighboring gene transfer RNA alanine (anticodon CGC)

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046073.1 Chromosome 5 Reference kPetMar1.pri Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP-dependent chromatin remodeler activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chromodomain-helicase-DNA-binding protein 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Petromyzon marinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference kPetMar1.pri Primary Assembly

    Genomic

    1. NC_046073.1 Reference kPetMar1.pri Primary Assembly

      Range
      18056056..18060868 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032947458.1 → XP_032803349.1  chromodomain-helicase-DNA-binding protein 1-like

      UniProtKB/TrEMBL
      A0AAJ7SQ07
      Related
      ENSPMAP00000047555.1, ENSPMAT00000083204.1
      Conserved Domains (3) summary
      PLN03142
      Location:21 → 508
      PLN03142; Probable chromatin-remodeling complex ATPase chain; Provisional
      cd03331
      Location:720 → 871
      Macro_Poa1p-like_SNF2; macrodomain, Poa1p-like family, SNF2 subfamily
      cl00038
      Location:1001 → 1089
      BRCT; C-terminal domain of the breast cancer suppressor protein (BRCA1) and related domains
    Nucleotide Protein
    Heading Accession and Version

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