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    LAMA2 laminin subunit alpha 2 [ Phocoena sinus (vaquita) ]

    Gene ID: 116763252, updated on 18-Mar-2024

    Summary

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    Gene symbol
    LAMA2
    Gene description
    laminin subunit alpha 2
    See related
    Ensembl:ENSPSNG00000006771
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phocoena sinus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Phocoenidae; Phocoena
    Orthologs
    human mouse all
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    Genomic context

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    See LAMA2 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    65
    Annotation release Status Assembly Chr Location
    100 current mPhoSin1.pri (GCF_008692025.1) 12 NC_045774.1 (32920535..33534424, complement)

    Chromosome 12 - NC_045774.1Genomic Context describing neighboring genes Neighboring gene L3MBTL histone methyl-lysine binding protein 3 Neighboring gene Rho GTPase activating protein 18 Neighboring gene U6 spliceosomal RNA Neighboring gene U2 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_045774.1 Chromosome 12 Reference mPhoSin1.pri

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of embryonic development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: laminin subunit alpha-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phocoena sinus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mPhoSin1.pri

    Genomic

    1. NC_045774.1 Reference mPhoSin1.pri

      Range
      32920535..33534424 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_032650802.1 → XP_032506693.1  LOW QUALITY PROTEIN: laminin subunit alpha-2

      UniProtKB/TrEMBL
      A0A8C9BPW3
      Related
      ENSPSNP00000009713.1, ENSPSNT00000010987.1
      Conserved Domains (11) summary
      smart00180
      Location:971 → 1015
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00281
      Location:1233 → 1368
      LamB; Laminin B domain
      cd00055
      Location:921 → 967
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2945 → 3097
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      TIGR02168
      Location:1739 → 2080
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam06008
      Location:1598 → 1856
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2041 → 2177
      Laminin_II; Laminin Domain II
      pfam00052
      Location:587 → 726
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:1064 → 1112
      Laminin_EGF; Laminin EGF domain
      pfam00054
      Location:2797 → 2925
      Laminin_G_1; Laminin G domain
      pfam00055
      Location:44 → 289
      Laminin_N; Laminin N-terminal (Domain VI)
    Nucleotide Protein
    Heading Accession and Version

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