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    LOC112559617 protocadherin Fat 4-like [ Pomacea canaliculata ]

    Gene ID: 112559617, updated on 9-Nov-2023

    Summary

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    Gene symbol
    LOC112559617
    Gene description
    protocadherin Fat 4-like
    See related
    EnsemblRapid:LOC112559617
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Pomacea canaliculata
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Gastropoda; Caenogastropoda; Architaenioglossa; Ampullarioidea; Ampullariidae; Pomacea
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    Genomic context

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    See LOC112559617 in Genome Data Viewer
    Location:
    chromosome: LG3
    Exon count:
    17
    Annotation release Status Assembly LG Location
    100 current ASM307304v1 (GCF_003073045.1) LG3 NC_037592.1 (31529798..31609520)

    Linkage Group LG3 - NC_037592.1Genomic Context describing neighboring genes Neighboring gene SLAIN motif-containing protein 2-like Neighboring gene protocadherin Fat 4-like Neighboring gene uncharacterized LOC112558833 Neighboring gene uncharacterized LOC112560588

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037592.1 Chromosome LG3 Reference ASM307304v1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell-cell junction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: protocadherin Fat 4-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Pomacea canaliculata Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM307304v1 Primary Assembly

    Genomic

    1. NC_037592.1 Reference ASM307304v1 Primary Assembly

      Range
      31529798..31609520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_025230953.1 → XP_025086738.1  LOW QUALITY PROTEIN: protocadherin Fat 4-like

      Related
      XP_025086738.1, XM_025230953.1
      Conserved Domains (7) summary
      cd11304
      Location:315 → 411
      Cadherin_repeat; Cadherin tandem repeat domain
      smart00112
      Location:1384 → 1467
      CA; Cadherin repeats
      cd00054
      Location:2979 → 3015
      EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
      cd00110
      Location:3055 → 3229
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00028
      Location:1683 → 1755
      Cadherin; Cadherin domain
      pfam00008
      Location:3020 → 3049
      EGF; EGF-like domain
      cl09101
      Location:2068 → 2119
      E_set; Early set domain associated with the catalytic domain of sugar utilizing enzymes at either the N or C terminus
    Nucleotide Protein
    Heading Accession and Version

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