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    PKHD1 PKHD1 ciliary IPT domain containing fibrocystin/polyductin [ Phascolarctos cinereus (koala) ]

    Gene ID: 110213527, updated on 15-Mar-2024

    Summary

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    Gene symbol
    PKHD1
    Gene description
    PKHD1 ciliary IPT domain containing fibrocystin/polyductin
    See related
    Ensembl:ENSPCIG00000003504
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Phascolarctos cinereus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phascolarctidae; Phascolarctos
    Orthologs
    human mouse all
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    Genomic context

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    See PKHD1 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    68
    Annotation release Status Assembly Chr Location
    100 current phaCin_unsw_v4.1 (GCF_002099425.1) Unplaced Scaffold NW_018344006.1 (3964101..4590512)

    NW_018344006.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110213494 Neighboring gene interleukin 17A Neighboring gene ubiquitin-like protein FUBI pseudogene Neighboring gene uncharacterized LOC110213529 Neighboring gene actin-related protein 2/3 complex subunit 1A pseudogene Neighboring gene uncharacterized LOC110213605

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_018344006 Unplaced Scaffold Reference phaCin_unsw_v4.1 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    fibrocystin
    Names
    PKHD1, fibrocystin/polyductin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Phascolarctos cinereus Annotation Release 100 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference phaCin_unsw_v4.1 Primary Assembly

    Genomic

    1. NW_018344006.1 Reference phaCin_unsw_v4.1 Primary Assembly

      Range
      3964101..4590512
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_020993907.1 → XP_020849566.1  fibrocystin isoform X1

      UniProtKB/TrEMBL
      A0A6P5L1T5
      Conserved Domains (5) summary
      cd00603
      Location:1202 → 1300
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01833
      Location:1113 → 1197
      TIG; IPT/TIG domain
      pfam10162
      Location:1938 → 2056
      G8; G8 domain
      pfam13229
      Location:3032 → 3197
      Beta_helix; Right handed beta helix region
      cl08459
      Location:357 → 480
      PA14; PA14 domain

    2. XM_020993908.1 → XP_020849567.1  fibrocystin isoform X2

      UniProtKB/TrEMBL
      A0A6P5KWA5
      Conserved Domains (5) summary
      cd00603
      Location:1202 → 1300
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01833
      Location:1113 → 1197
      TIG; IPT/TIG domain
      pfam10162
      Location:1938 → 2056
      G8; G8 domain
      pfam13229
      Location:3009 → 3174
      Beta_helix; Right handed beta helix region
      cl08459
      Location:357 → 480
      PA14; PA14 domain

    3. XM_020993909.1 → XP_020849568.1  fibrocystin isoform X3

      UniProtKB/TrEMBL
      A0A6P5KUZ2
      Conserved Domains (5) summary
      cd00603
      Location:1202 → 1300
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01833
      Location:1113 → 1197
      TIG; IPT/TIG domain
      pfam10162
      Location:1938 → 2056
      G8; G8 domain
      pfam13229
      Location:3032 → 3154
      Beta_helix; Right handed beta helix region
      cl08459
      Location:357 → 480
      PA14; PA14 domain

    4. XM_020993910.1 → XP_020849569.1  fibrocystin isoform X4

      UniProtKB/TrEMBL
      A0A6P5KYA5
      Related
      ENSPCIP00000004622.2, ENSPCIT00000005769.2
      Conserved Domains (5) summary
      cd00603
      Location:1202 → 1300
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      pfam01833
      Location:1113 → 1197
      TIG; IPT/TIG domain
      pfam10162
      Location:1938 → 2056
      G8; G8 domain
      pfam13229
      Location:3032 → 3154
      Beta_helix; Right handed beta helix region
      cl08459
      Location:357 → 480
      PA14; PA14 domain
    Nucleotide Protein
    Heading Accession and Version

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