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    LOC108466984 caffeoylshikimate esterase [ Gossypium arboreum ]

    Gene ID: 108466984, updated on 23-Nov-2023

    Summary

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    Gene symbol
    LOC108466984
    Gene description
    caffeoylshikimate esterase
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Gossypium arboreum
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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    Genomic context

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    See LOC108466984 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2022_12 current ASM2569848v2 (GCF_025698485.1) 6 NC_069075.1 (42950395..42951439, complement)
    100 previous assembly Gossypium_arboreum_v1.0 (GCF_000612285.1) 2 NC_030665.1 (42046323..42047593, complement)

    Chromosome 6 - NC_069075.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108484712 Neighboring gene helicase-like transcription factor CHR28 Neighboring gene serine carboxypeptidase-like 31 Neighboring gene NAC transcription factor 25-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoylshikimate esterase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_025698485.1-RS_

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM2569848v2 Primary Assembly

    Genomic

    1. NC_069075.1 Reference ASM2569848v2 Primary Assembly

      Range
      42950395..42951439 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017767417.2 → XP_017622906.1  caffeoylshikimate esterase

      Conserved Domains (1) summary
      cl21494
      Location:3 → 312
      Abhydrolase; alpha/beta hydrolases
    Nucleotide Protein
    Heading Accession and Version

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