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    LOC106163871 laminin subunit alpha-2 [ Lingula anatina ]

    Gene ID: 106163871, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC106163871
    Gene description
    laminin subunit alpha-2
    See related
    EnsemblRapid:LOC106163871
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Lingula anatina
    Lineage
    Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Brachiopoda; Linguliformea; Lingulata; Lingulida; Linguloidea; Lingulidae; Lingula
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    Genomic context

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    See LOC106163871 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    65
    Annotation release Status Assembly Chr Location
    101 current LinAna2.0 (GCF_001039355.2) Unplaced Scaffold NW_019775303.1 (358627..427867)
    100 previous assembly LinAna1.0 (GCF_001039355.1) Unplaced Scaffold NW_013578255.1 (358628..427867)

    NW_019775303.1Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine N-methyltransferase 1 Neighboring gene uncharacterized LOC106163836 Neighboring gene A-kinase anchor protein 7 Neighboring gene A-kinase anchor protein 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Lingula genome provides insights into brachiopod evolution and the origin of phosphate biomineralization. Luo YJ, et al. Nat Commun, 2015 Sep 18. PMID 26383154, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables signaling receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of embryonic development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    laminin subunit alpha-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Lingula anatina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference LinAna2.0 Primary Assembly

    Genomic

    1. NW_019775303.1 Reference LinAna2.0 Primary Assembly

      Range
      358627..427867
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_013541577.2 → XP_013397031.1  laminin subunit alpha-2 isoform X1

      UniProtKB/TrEMBL
      A0A1S3IGN9
      Related
      XP_013397031.1, XM_013541577.2
      Conserved Domains (11) summary
      smart00180
      Location:1075 → 1120
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00282
      Location:2260 → 2411
      LamG; Laminin G domain
      COG0840
      Location:1845 → 2226
      Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
      cd00055
      Location:1025 → 1073
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:3047 → 3200
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00052
      Location:569 → 708
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:1170 → 1218
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:42 → 278
      Laminin_N; Laminin N-terminal (Domain VI)
      pfam06008
      Location:1697 → 1941
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2129 → 2252
      Laminin_II; Laminin Domain II
      cl23910
      Location:1687 → 2135
      Replic_Relax; Replication-relaxation

    2. XM_013541579.2 → XP_013397033.1  laminin subunit alpha-2 isoform X3

      UniProtKB/TrEMBL
      A0A1S3IFV8
      Related
      XP_013397033.1, XM_013541579.2
      Conserved Domains (11) summary
      smart00180
      Location:1061 → 1106
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00282
      Location:2246 → 2397
      LamG; Laminin G domain
      COG0840
      Location:1831 → 2212
      Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
      cd00055
      Location:1011 → 1059
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:3033 → 3186
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00052
      Location:569 → 708
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:1156 → 1204
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:42 → 278
      Laminin_N; Laminin N-terminal (Domain VI)
      pfam06008
      Location:1683 → 1927
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2115 → 2238
      Laminin_II; Laminin Domain II
      cl23910
      Location:1673 → 2121
      Replic_Relax; Replication-relaxation

    3. XM_013541578.2 → XP_013397032.1  laminin subunit alpha-2 isoform X2

      UniProtKB/TrEMBL
      A0A1S3IFM7
      Related
      XP_013397032.1, XM_013541578.2
      Conserved Domains (11) summary
      smart00180
      Location:1068 → 1113
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00282
      Location:2253 → 2404
      LamG; Laminin G domain
      COG0840
      Location:1838 → 2219
      Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
      cd00055
      Location:1018 → 1066
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:3040 → 3193
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00052
      Location:569 → 701
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:1163 → 1211
      Laminin_EGF; Laminin EGF domain
      pfam00055
      Location:42 → 278
      Laminin_N; Laminin N-terminal (Domain VI)
      pfam06008
      Location:1690 → 1934
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2122 → 2245
      Laminin_II; Laminin Domain II
      cl23910
      Location:1680 → 2128
      Replic_Relax; Replication-relaxation

    4. XM_013541580.1 → XP_013397034.1  laminin subunit alpha-2 isoform X4

      UniProtKB/TrEMBL
      A0A1S3IHS1
      Related
      XP_013397034.1, XM_013541580.1
      Conserved Domains (11) summary
      smart00180
      Location:952 → 997
      EGF_Lam; Laminin-type epidermal growth factor-like domai
      smart00282
      Location:2137 → 2288
      LamG; Laminin G domain
      COG0840
      Location:1722 → 2103
      Tar; Methyl-accepting chemotaxis protein [Cell motility, Signal transduction mechanisms]
      cd00055
      Location:902 → 950
      EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
      cd00110
      Location:2924 → 3077
      LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
      pfam00052
      Location:446 → 585
      Laminin_B; Laminin B (Domain IV)
      pfam00053
      Location:1047 → 1095
      Laminin_EGF; Laminin EGF domain
      pfam06008
      Location:1574 → 1818
      Laminin_I; Laminin Domain I
      pfam06009
      Location:2006 → 2129
      Laminin_II; Laminin Domain II
      cl02806
      Location:2 → 155
      Laminin_N; Laminin N-terminal (Domain VI)
      cl23910
      Location:1564 → 2012
      Replic_Relax; Replication-relaxation
    Nucleotide Protein
    Heading Accession and Version

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