U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    SOD2 superoxide dismutase 2 [ Macaca nemestrina (pig-tailed macaque) ]

    Gene ID: 105492026, updated on 13-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    SOD2
    Gene description
    superoxide dismutase 2
    See related
    Ensembl:ENSMNEG00000031749
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Macaca nemestrina
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Cercopithecidae; Cercopithecinae; Macaca
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See SOD2 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    101 current Mnem_1.0 (GCF_000956065.1) Unplaced Scaffold NW_012011411.1 (879773..893200)

    NW_012011411.1Genomic Context describing neighboring genes Neighboring gene U4atac minor spliceosomal RNA Neighboring gene heterogeneous nuclear ribonucleoprotein H2-like Neighboring gene uncharacterized LOC105492027 Neighboring gene uncharacterized LOC105492028

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NW_012011411 Unplaced Scaffold Reference Mnem_1.0

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables superoxide dismutase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in superoxide metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    superoxide dismutase [Mn], mitochondrial
    Names
    superoxide dismutase 2, mitochondrial
    NP_001292828.1
    XP_011757159.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305899.1 → NP_001292828.1  superoxide dismutase [Mn], mitochondrial

      See identical proteins and their annotated locations for NP_001292828.1

      Status: PROVISIONAL

      Source sequence(s)
      AB201468
      UniProtKB/Swiss-Prot
      Q5FB30
      UniProtKB/TrEMBL
      A0A2K6BV99
      Related
      ENSMNEP00000015276.1, ENSMNET00000039484.1
      Conserved Domains (3) summary
      COG0605
      Location:23 → 222
      SodA; Superoxide dismutase [Inorganic ion transport and metabolism]
      pfam00081
      Location:25 → 106
      Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
      pfam02777
      Location:113 → 216
      Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain

    RefSeqs of Annotated Genomes: Macaca nemestrina Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Mnem_1.0

    Genomic

    1. NW_012011411.1 Reference Mnem_1.0

      Range
      879773..893200
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011758857.1 → XP_011757159.1  superoxide dismutase [Mn], mitochondrial isoform X1

      UniProtKB/TrEMBL
      A0A2K6BV32, A0A2K6BV99
      Related
      ENSMNEP00000015258.1, ENSMNET00000039466.1
      Conserved Domains (3) summary
      COG0605
      Location:23 → 222
      SodA; Superoxide dismutase [Inorganic ion transport and metabolism]
      pfam00081
      Location:25 → 106
      Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
      pfam02777
      Location:113 → 216
      Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5FB30.1 GenPept UniProtKB/Swiss-Prot:Q5FB30

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.