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    LOC101406268 aldehyde dehydrogenase 1 family member L1 [ Ceratotherium simum simum (southern white rhinoceros) ]

    Gene ID: 101406268, updated on 8-Mar-2024

    Summary

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    Gene symbol
    LOC101406268
    Gene description
    aldehyde dehydrogenase 1 family member L1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Ceratotherium simum simum (sub-species: simum)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Rhinocerotidae; Ceratotherium
    Also known as
    ALDH1L1
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    human mouse all
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    Genomic context

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    See LOC101406268 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    101 current CerSimSim1.0 (GCF_000283155.1) Unplaced Scaffold NW_004454324.1 (650973..684408)

    NW_004454324.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 100 Neighboring gene KLF transcription factor 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_004454324.1 Unplaced Scaffold Reference CerSimSim1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables methionyl-tRNA formyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in conversion of methionyl-tRNA to N-formyl-methionyl-tRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytosolic 10-formyltetrahydrofolate dehydrogenase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Ceratotherium simum simum Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference CerSimSim1.0 Primary Assembly

    Genomic

    1. NW_004454324.1 Reference CerSimSim1.0 Primary Assembly

      Range
      650973..684408
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_004443571.2 → XP_004443628.2  cytosolic 10-formyltetrahydrofolate dehydrogenase

      Conserved Domains (3) summary
      cd08647
      Location:1 → 203
      FMT_core_FDH_N; 10-formyltetrahydrofolate dehydrogenase (FDH), N-terminal hydrolase domain
      COG0223
      Location:1 → 261
      Fmt; Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
      cl14785
      Location:206 → 288
      FMT_C_like; Carboxy-terminal domain of Formyltransferase and similar domains
    Nucleotide Protein
    Heading Accession and Version

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