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    LOC101219825 pentatricopeptide repeat-containing protein At4g30825, chloroplastic [ Cucumis sativus (cucumber) ]

    Gene ID: 101219825, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC101219825
    Gene description
    pentatricopeptide repeat-containing protein At4g30825, chloroplastic
    Locus tag
    Csa_020004
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cucumis sativus
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current Cucumber_9930_V3 (GCF_000004075.3) 1 NC_026655.2 (15969780..15973951, complement)
    101 previous assembly ASM407v2 (GCF_000004075.2) 1 NC_026655.1 (12646355..12650519, complement)

    Chromosome 1 - NC_026655.2Genomic Context describing neighboring genes Neighboring gene putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 Neighboring gene putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 Neighboring gene uncharacterized LOC101207027 Neighboring gene uncharacterized LOC101219584 Neighboring gene 50S ribosomal protein L35, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At4g30825, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Cucumis sativus Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Cucumber_9930_V3 Primary Assembly

    Genomic

    1. NC_026655.2 Reference Cucumber_9930_V3 Primary Assembly

      Range
      15969780..15973951 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011657343.2 → XP_011655645.1  pentatricopeptide repeat-containing protein At4g30825, chloroplastic

      See identical proteins and their annotated locations for XP_011655645.1

      UniProtKB/TrEMBL
      A0A0A0LTR9
      Conserved Domains (2) summary
      PLN03218
      Location:494 → 866
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:760 → 787
      PPR; PPR repeat [structural motif]

    2. XM_004146671.3 → XP_004146719.1  pentatricopeptide repeat-containing protein At4g30825, chloroplastic

      See identical proteins and their annotated locations for XP_004146719.1

      UniProtKB/TrEMBL
      A0A0A0LTR9
      Conserved Domains (2) summary
      PLN03218
      Location:494 → 866
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:760 → 787
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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