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Conserved domains on  [gi|449457967|ref|XP_004146719|]
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pentatricopeptide repeat-containing protein At4g30825, chloroplastic [Cucumis sativus]

Protein Classification

pentatricopeptide repeat-containing protein( domain architecture ID 1000098)

pentatricopeptide repeat (PPR)-containing protein may form anti-parallel alpha helices and bind single-stranded RNA in a sequence-specific and modular manner

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 494-866 2.83e-20

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 96.87  E-value: 2.83e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  494 VDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLS 573
Cdd:PLN03218  453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  574 LRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVL-DLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSW 652
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLaEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  653 DQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMIS 731
Cdd:PLN03218  613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIkLGTVSYSSLMG 692

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  732 VYGKNKDFKNmsstvqkmkfngfsvSLEAYncmldaygkecqmENFRSVlqRMQETSSecdhyTYNIMINIYGEQGWIDE 811
Cdd:PLN03218  693 ACSNAKNWKK---------------ALELY-------------EDIKSI--KLRPTVS-----TMNALITALCEGNQLPK 737

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 449457967  812 VAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITY 866
Cdd:PLN03218  738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PLN03218 super family cl33664
maturation of RBCL 1; Provisional
 120-450 2.32e-17

maturation of RBCL 1; Provisional


The actual alignment was detected with superfamily member PLN03218:

Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 87.24  E-value: 2.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  120 YSTISSDLSLEDCNAILKRLE--------KCNDSKtlgFFEWMRSNG---------KLKHN--VSAYNLVLRVLGRQEDW 180
Cdd:PLN03218  377 YNRLLRDGRIKDCIDLLEDMEkrglldmdKIYHAK---FFKACKKQRavkeafrfaKLIRNptLSTFNMLMSVCASSQDI 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  181 DAAEKLIEEVRaELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLM----------------GL 244
Cdd:PLN03218  454 DGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIdgcaragqvakafgayGI 532

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  245 YQKKcDIKESEFAFNQM-----------RNFGIVCE------------TAYASMITIYIRMNLYDKAEEVIQLMQEDKVI 301
Cdd:PLN03218  533 MRSK-NVKPDRVVFNALisacgqsgavdRAFDVLAEmkaethpidpdhITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  302 PNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMI 381
Cdd:PLN03218  612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 449457967  382 EGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDEAGTLKTLNDMLKIGCRPSSIVGNVL 450
Cdd:PLN03218  692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 494-866 2.83e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 96.87  E-value: 2.83e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  494 VDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLS 573
Cdd:PLN03218  453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  574 LRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVL-DLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSW 652
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLaEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  653 DQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMIS 731
Cdd:PLN03218  613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIkLGTVSYSSLMG 692

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  732 VYGKNKDFKNmsstvqkmkfngfsvSLEAYncmldaygkecqmENFRSVlqRMQETSSecdhyTYNIMINIYGEQGWIDE 811
Cdd:PLN03218  693 ACSNAKNWKK---------------ALELY-------------EDIKSI--KLRPTVS-----TMNALITALCEGNQLPK 737

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 449457967  812 VAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITY 866
Cdd:PLN03218  738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 120-450 2.32e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 87.24  E-value: 2.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  120 YSTISSDLSLEDCNAILKRLE--------KCNDSKtlgFFEWMRSNG---------KLKHN--VSAYNLVLRVLGRQEDW 180
Cdd:PLN03218  377 YNRLLRDGRIKDCIDLLEDMEkrglldmdKIYHAK---FFKACKKQRavkeafrfaKLIRNptLSTFNMLMSVCASSQDI 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  181 DAAEKLIEEVRaELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLM----------------GL 244
Cdd:PLN03218  454 DGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIdgcaragqvakafgayGI 532

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  245 YQKKcDIKESEFAFNQM-----------RNFGIVCE------------TAYASMITIYIRMNLYDKAEEVIQLMQEDKVI 301
Cdd:PLN03218  533 MRSK-NVKPDRVVFNALisacgqsgavdRAFDVLAEmkaethpidpdhITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  302 PNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMI 381
Cdd:PLN03218  612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 449457967  382 EGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDEAGTLKTLNDMLKIGCRPSSIVGNVL 450
Cdd:PLN03218  692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 826-873 1.55e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.55e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 449457967  826 PDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRAL 873
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 338-383 4.68e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 4.68e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 449457967  338 NIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEG 383
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 829-862 2.68e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 2.68e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 449457967  829 YSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPD 862
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 307-339 5.48e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 5.48e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 449457967  307 WVVMLNAYCQQGKMEEAELVFASMEEAGFSSNI 339
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 176-363 2.51e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 176 RQEDWDAAEKLIEEVRAElgSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLEcqVQPNVATFGMLMG-LYQKKCDIKES 254
Cdd:COG2956   88 KAGLLDRAEELLEKLLEL--DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK--LGPENAHAYCELAeLYLEQGDYDEA 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 255 EFAFNQMRNFGIVCETAYASMITIYIRMNLYDKAEEVIQ--LMQEDKVIPNLENwvvMLNAYCQQGKMEEAELVFASMEE 332
Cdd:COG2956  164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALEraLEQDPDYLPALPR---LAELYEKLGDPEEALELLRKALE 240

                        170       180       190
                 ....*....|....*....|....*....|.
gi 449457967 333 AGfsSNIIAYNTLITGYGKASNMDTAQRLFL 363
Cdd:COG2956  241 LD--PSDDLLLALADLLERKEGLEAALALLE 269
 
Name Accession Description Interval E-value
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 494-866 2.83e-20

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 96.87  E-value: 2.83e-20
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  494 VDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLS 573
Cdd:PLN03218  453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  574 LRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVL-DLMAEQQDIVPDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSW 652
Cdd:PLN03218  533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLaEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  653 DQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMIS 731
Cdd:PLN03218  613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIkLGTVSYSSLMG 692

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  732 VYGKNKDFKNmsstvqkmkfngfsvSLEAYncmldaygkecqmENFRSVlqRMQETSSecdhyTYNIMINIYGEQGWIDE 811
Cdd:PLN03218  693 ACSNAKNWKK---------------ALELY-------------EDIKSI--KLRPTVS-----TMNALITALCEGNQLPK 737

                         330       340       350       360       370
                  ....*....|....*....|....*....|....*....|....*....|....*
gi 449457967  812 VAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITY 866
Cdd:PLN03218  738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMC 792
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 120-450 2.32e-17

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 87.24  E-value: 2.32e-17
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  120 YSTISSDLSLEDCNAILKRLE--------KCNDSKtlgFFEWMRSNG---------KLKHN--VSAYNLVLRVLGRQEDW 180
Cdd:PLN03218  377 YNRLLRDGRIKDCIDLLEDMEkrglldmdKIYHAK---FFKACKKQRavkeafrfaKLIRNptLSTFNMLMSVCASSQDI 453

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  181 DAAEKLIEEVRaELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLM----------------GL 244
Cdd:PLN03218  454 DGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIdgcaragqvakafgayGI 532

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  245 YQKKcDIKESEFAFNQM-----------RNFGIVCE------------TAYASMITIYIRMNLYDKAEEVIQLMQEDKVI 301
Cdd:PLN03218  533 MRSK-NVKPDRVVFNALisacgqsgavdRAFDVLAEmkaethpidpdhITVGALMKACANAGQVDRAKEVYQMIHEYNIK 611

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  302 PNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMI 381
Cdd:PLN03218  612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691

                         330       340       350       360       370       380
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 449457967  382 EGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINLQAKHEDEAGTLKTLNDMLKIGCRPSSIVGNVL 450
Cdd:PLN03218  692 GACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760
PLN03077 PLN03077
Protein ECB2; Provisional
 310-885 5.32e-15

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 79.51  E-value: 5.32e-15
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 310 MLNAYCQQGKMEEAELVFASMEEagfsSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEGWGRAGN 389
Cdd:PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 390 YKMAEWYYKELKRRGYMPNSSNLFTLINLQAKhedeagtlktlndmlkigCrpssivGNVLQAyekarrmksvpvlltgs 469
Cdd:PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVK------------------C------GDVVSA----------------- 241

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 470 fyRKVLSSqtscsilvMAyVKHCLVDDALKvlrekewkDHHFEENLyhllicsCKElghlenAIKIYTQLPKRENKPNLH 549
Cdd:PLN03077 242 --RLVFDR--------MP-RRDCISWNAMI--------SGYFENGE-------CLE------GLELFFTMRELSVDPDLM 289

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 550 ITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMaEQQDIVPdiylLRDMLRIY 629
Cdd:PLN03077 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-ETKDAVS----WTAMISGY 364

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 630 QRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKAR 709
Cdd:PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 710 NLF-GLAQKrglvDAISYNTMISVYGKNKD-------FKNMSSTVQKMKFNGFS-------------------------V 756
Cdd:PLN03077 445 EVFhNIPEK----DVISWTSIIAGLRLNNRcfealifFRQMLLTLKPNSVTLIAalsacarigalmcgkeihahvlrtgI 520

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 757 SLEAY--NCMLDAYGKECQMENFRSvlqrmQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTL 834
Cdd:PLN03077 521 GFDGFlpNALLDLYVRCGRMNYAWN-----QFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISL 595

                        570       580       590       600       610
                 ....*....|....*....|....*....|....*....|....*....|..
gi 449457967 835 IKAYGIAGMVEEAAQLVKEMREK-RIEPDRITYINMIRALQRNDQFLEAVKW 885
Cdd:PLN03077 596 LCACSRSGMVTQGLEYFHSMEEKySITPNLKHYACVVDLLGRAGKLTEAYNF 647
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 569-883 1.30e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 74.91  E-value: 1.30e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 569 KLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQ---------------DIVPDIYLLRDMLRIYQRCG 633
Cdd:PLN03081 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNlaswgtiigglvdagNYREAFALFREMWEDGSDAE 223

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 634 ------MVHKLA---------DLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQcgfaPNTVTLNVMLDV 698
Cdd:PLN03081 224 prtfvvMLRASAglgsaragqQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAG 299

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 699 YGKSKLFTKARNLFGLAQKRGL-VDAISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENF 777
Cdd:PLN03081 300 YALHGYSEEALCLYYEMRDSGVsIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 778 RSVLQRMQETSSecdhYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMRE- 856
Cdd:PLN03081 380 RNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEn 455

                        330       340
                 ....*....|....*....|....*..
gi 449457967 857 KRIEPDRITYINMIRALQRNDQFLEAV 883
Cdd:PLN03081 456 HRIKPRAMHYACMIELLGREGLLDEAY 482
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 537-872 1.94e-13

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 74.14  E-value: 1.94e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 537 TQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLSLRSsGIPLDLIA--YNVVVRMYVKAGSLEDACSVLDLMaEQQD 614
Cdd:PLN03081  76 ARLDDTQIRKSGVSLCSQIEKLVACGRHREALELFEILEA-GCPFTLPAstYDALVEACIALKSIRCVKAVYWHV-ESSG 153

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 615 IVPDIYLLRDMLRIYQRCGMVHKLADLYYRI-LKSGVSWDQEMYNCVinccSRALPVDELsRLFDEMLQCGFAPNTVTLN 693
Cdd:PLN03081 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMpERNLASWGTIIGGLV----DAGNYREAF-ALFREMWEDGSDAEPRTFV 228

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 694 VMLDVYGKSKLFTKARNLFGLAQKRGLVDAISYN-TMISVYGKNKDFKNMSSTVQKMKfngfSVSLEAYNCMLDAYGKEC 772
Cdd:PLN03081 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVScALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHG 304

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 773 QMENFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEP---------DLY-------------- 829
Cdd:PLN03081 305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLdivantalvDLYskwgrmedarnvfd 384

                        330       340       350       360       370
                 ....*....|....*....|....*....|....*....|....*....|.
gi 449457967 830 --------SYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRA 872
Cdd:PLN03081 385 rmprknliSWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
PLN03077 PLN03077
Protein ECB2; Provisional
 527-893 8.34e-13

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 72.57  E-value: 8.34e-13
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 527 GHLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVL 606
Cdd:PLN03077  65 GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVF 144

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 607 DLMAEQqdivpDIYLLRDMLRIYQRCGMVHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFA 686
Cdd:PLN03077 145 GKMPER-----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE 219

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 687 PNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRglvDAISYNTMISVYGKN-------------------KDFKNMSSTVQ 747
Cdd:PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPRR---DCISWNAMISGYFENgecleglelfftmrelsvdPDLMTITSVIS 296

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 748 KMKF----------------NGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMqetssEC-DHYTYNIMINIYGEQGWID 810
Cdd:PLN03077 297 ACELlgderlgremhgyvvkTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM-----ETkDAVSWTAMISGYEKNGLPD 371

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 811 EVAEVLTELKACGLEPD-------------------------------LYSY----NTLIKAYGIAGMVEEAAQLVKEMR 855
Cdd:PLN03077 372 KALETYALMEQDNVSPDeitiasvlsacaclgdldvgvklhelaerkgLISYvvvaNALIEMYSKCKCIDKALEVFHNIP 451

                        410       420       430
                 ....*....|....*....|....*....|....*...
gi 449457967 856 EKriepDRITYINMIRALQRNDQFLEAVkwsLWMKQMK 893
Cdd:PLN03077 452 EK----DVISWTSIIAGLRLNNRCFEAL---IFFRQML 482
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 299-730 1.38e-12

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 71.83  E-value: 1.38e-12
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  299 KVIPN--LENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETT 376
Cdd:PLN03218  430 KLIRNptLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHT 509

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  377 YRSMIEGWGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLINlqakhedeagtlktlndmlkiGCRPSsivGNVLQAYEKA 456
Cdd:PLN03218  510 FGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS---------------------ACGQS---GAVDRAFDVL 565

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  457 RRMK--SVPVLLTgsfyrkvlssqtscSILVMAYVKHCL----VDDALKV---LREKEWKDhhFEEnLYHLLICSCKELG 527
Cdd:PLN03218  566 AEMKaeTHPIDPD--------------HITVGALMKACAnagqVDRAKEVyqmIHEYNIKG--TPE-VYTIAVNSCSQKG 628

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  528 HLENAIKIYTQLPKRENKPNLHITCTMIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNvvvrmyvkagSLEDACSVLd 607
Cdd:PLN03218  629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS----------SLMGACSNA- 697

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  608 lmaeqqdivpdiyllrdmlriyqrcGMVHKLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAP 687
Cdd:PLN03218  698 -------------------------KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

                         410       420       430       440
                  ....*....|....*....|....*....|....*....|...
gi 449457967  688 NTVTLNVMLDVYGKSKLFTKARNLFGLAQKrglvDAISYNTMI 730
Cdd:PLN03218  753 NTITYSILLVASERKDDADVGLDLLSQAKE----DGIKPNLVM 791
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 483-857 2.26e-12

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 71.05  E-value: 2.26e-12
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 483 ILVMaYVKHCLVDDALKVLrekewkDHHFEENL--YHLLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMIDIYSI 560
Cdd:PLN03081 164 VLLM-HVKCGMLIDARRLF------DEMPERNLasWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 561 MGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEQQDIVpdiylLRDMLRIYQRCGMVHKLAD 640
Cdd:PLN03081 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVA-----WNSMLAGYALHGYSEEALC 311

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 641 LYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL 720
Cdd:PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 721 vdaISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQE---TSSECDHYTyn 797
Cdd:PLN03081 392 ---ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEnhrIKPRAMHYA-- 466

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 798 IMINIYGEQGWIDEVAEVLTE-------------LKAC-----------------GLEPD-LYSYNTLIKAYGIAGMVEE 846
Cdd:PLN03081 467 CMIELLGREGLLDEAYAMIRRapfkptvnmwaalLTACrihknlelgrlaaeklyGMGPEkLNNYVVLLNLYNSSGRQAE 546

                        410
                 ....*....|.
gi 449457967 847 AAQLVKEMREK 857
Cdd:PLN03081 547 AAKVVETLKRK 557
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 687-859 3.20e-11

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 67.59  E-value: 3.20e-11
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  687 PNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGL-VDAISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCML 765
Cdd:PLN03218  435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLkADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  766 DAYGKECQMENFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKA--CGLEPDLYSYNTLIKAYGIAGM 843
Cdd:PLN03218  515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAetHPIDPDHITVGALMKACANAGQ 594

                         170
                  ....*....|....*.
gi 449457967  844 VEEAAQLVKEMREKRI 859
Cdd:PLN03218  595 VDRAKEVYQMIHEYNI 610
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 323-824 4.66e-11

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 66.43  E-value: 4.66e-11
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 323 AELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKnsgvEPDETTYRSMIEGWGRAGNYKMAEWYYKELKR 402
Cdd:PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWE 217

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 403 RGYMPNSSNLFTLInlqakhedeagtlktlndmlkigcRPSSIVGNVlqayeKARRMKSVPVLLTGSFYRKVLSsqtsCS 482
Cdd:PLN03081 218 DGSDAEPRTFVVML------------------------RASAGLGSA-----RAGQQLHCCVLKTGVVGDTFVS----CA 264

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 483 ILVMaYVKHCLVDDALKV---LREKE---WKDhhfeenlyhlLICSCKELGHLENAIKIYTQLPKRENKPNLHITCTMID 556
Cdd:PLN03081 265 LIDM-YSKCGDIEDARCVfdgMPEKTtvaWNS----------MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 557 IYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEqqdivpdiyllrdmlriyqrcgmvh 636
Cdd:PLN03081 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR------------------------- 388

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 637 kladlyyrilKSGVSWdqemyNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFGLAQ 716
Cdd:PLN03081 389 ----------KNLISW-----NALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 717 K--RGLVDAISYNTMISVYGKNKDFKNMSSTVQKMKFngfSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSSEcDHY 794
Cdd:PLN03081 454 EnhRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF---KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLN 529

                        490       500       510
                 ....*....|....*....|....*....|
gi 449457967 795 TYNIMINIYGEQGWIDEVAEVLTELKACGL 824
Cdd:PLN03081 530 NYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 826-873 1.55e-10

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 56.99  E-value: 1.55e-10
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*...
gi 449457967  826 PDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRAL 873
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 648-882 2.90e-10

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 64.13  E-value: 2.90e-10
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  648 SGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKARNLFG-LAQKRGLVDAISY 726
Cdd:PLN03218  466 AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGiMRSKNVKPDRVVF 545

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  727 NTMISVYGK----NKDF---KNMSSTVQKMKFNGFSV---------------SLEAYNcMLDAYG----KEC-------- 772
Cdd:PLN03218  546 NALISACGQsgavDRAFdvlAEMKAETHPIDPDHITVgalmkacanagqvdrAKEVYQ-MIHEYNikgtPEVytiavnsc 624

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  773 ----QMENFRSVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAA 848
Cdd:PLN03218  625 sqkgDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL 704

                         250       260       270
                  ....*....|....*....|....*....|....
gi 449457967  849 QLVKEMREKRIEPDRITYINMIRALQRNDQFLEA 882
Cdd:PLN03218  705 ELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 338-383 4.68e-09

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 52.75  E-value: 4.68e-09
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 449457967  338 NIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEG 383
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILING 47
PLN03077 PLN03077
Protein ECB2; Provisional
 203-605 5.00e-09

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 60.25  E-value: 5.00e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 203 FNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVAT---------------FGM--------------------LMGLYQK 247
Cdd:PLN03077 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTitsvisacellgderLGRemhgyvvktgfavdvsvcnsLIQMYLS 335

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 248 KCDIKESEFAFNQMRNFGIVCETAyasMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEAELVF 327
Cdd:PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTA---MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH 412

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 328 ASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVepdeTTYRSMIEGWgRAGNYKMAEWYYKELKRRGYMP 407
Cdd:PLN03077 413 ELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGL-RLNNRCFEALIFFRQMLLTLKP 487

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 408 NSSNLFTLIN-------LQAKHEDEAGTLKT---LNDMLkigcrPSSIvgnvLQAYEKARRMKsvPVLLTGSFYRKVLSS 477
Cdd:PLN03077 488 NSVTLIAALSacarigaLMCGKEIHAHVLRTgigFDGFL-----PNAL----LDLYVRCGRMN--YAWNQFNSHEKDVVS 556

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 478 QtscSILVMAYVKHCLVDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKIYTQL-PKRENKPNL-HITCtMI 555
Cdd:PLN03077 557 W---NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYSITPNLkHYAC-VV 632

                        410       420       430       440       450
                 ....*....|....*....|....*....|....*....|....*....|....*
gi 449457967 556 DIYSIMGRFSDgeklylslrssgipldliAYNVVVRMYVKA-----GSLEDACSV 605
Cdd:PLN03077 633 DLLGRAGKLTE------------------AYNFINKMPITPdpavwGALLNACRI 669
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 632-875 5.10e-09

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 59.88  E-value: 5.10e-09
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 632 CGMVHKLADLYyRILKSGVSWD--QEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSKLFTKAR 709
Cdd:PLN03081 100 CGRHREALELF-EILEAGCPFTlpASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 710 NLFGLAQKRGLVdaiSYNTMIS-------VYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAY-GKE---CQMEnfr 778
Cdd:PLN03081 179 RLFDEMPERNLA---SWGTIIGglvdagnYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARaGQQlhcCVLK--- 252

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 779 svlqrmqeTSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKacglEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKR 858
Cdd:PLN03081 253 --------TGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320

                        250
                 ....*....|....*..
gi 449457967 859 IEPDRITYINMIRALQR 875
Cdd:PLN03081 321 VSIDQFTFSIMIRIFSR 337
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 159-550 1.16e-08

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 59.12  E-value: 1.16e-08
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  159 KLKHNVSAYNLVLRVlGRQEDwdaAEKLIEEVraELGSQLDF-QVFNTLIY-ACYKSRFVEQGTKWFRMMLEcqvqPNVA 236
Cdd:PLN03218  369 KSPEYIDAYNRLLRD-GRIKD---CIDLLEDM--EKRGLLDMdKIYHAKFFkACKKQRAVKEAFRFAKLIRN----PTLS 438

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  237 TFGMLMGlyqkkcdikesefafnqmrnfgiVCETAYASmitiyirmnlyDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQ 316
Cdd:PLN03218  439 TFNMLMS-----------------------VCASSQDI-----------DGALRVLRLVQEAGLKADCKLYTTLISTCAK 484

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  317 QGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTA--------------------------------QRLF-- 362
Cdd:PLN03218  485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAfgaygimrsknvkpdrvvfnalisacgqsgavDRAFdv 564

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  363 ---LGIKNSGVEPDETTYRSMIEGWGRAGN-------YKMAEWY----------------------------YKELKRRG 404
Cdd:PLN03218  565 laeMKAETHPIDPDHITVGALMKACANAGQvdrakevYQMIHEYnikgtpevytiavnscsqkgdwdfalsiYDDMKKKG 644

                         330       340       350       360       370       380       390       400
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  405 YMPNSSNLFTLINL--QAKHEDEAgtLKTLNDMLKIGCRP-----SSIVG---------NVLQAYEKARRMKSVPVLLTg 468
Cdd:PLN03218  645 VKPDEVFFSALVDVagHAGDLDKA--FEILQDARKQGIKLgtvsySSLMGacsnaknwkKALELYEDIKSIKLRPTVST- 721

                         410       420       430       440       450       460       470       480
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  469 sfyrkvlssqtsCSILVMAYVKHCLVDDALKVLreKEWKDHHFEENL--YHLLICSCKELGHLENAIKIYTQLPKRENKP 546
Cdd:PLN03218  722 ------------MNALITALCEGNQLPKALEVL--SEMKRLGLCPNTitYSILLVASERKDDADVGLDLLSQAKEDGIKP 787


                  ....
gi 449457967  547 NLHI 550
Cdd:PLN03218  788 NLVM 791
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 241-620 1.97e-08

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 57.96  E-value: 1.97e-08
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 241 LMGLYQKKCDIKESEFAFNQMRNFGIVcetAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKM 320
Cdd:PLN03081 265 LIDMYSKCGDIEDARCVFDGMPEKTTV---AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALL 341

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 321 EEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLF--LGIKNSgvepdeTTYRSMIEGWGRAGNYKMAEWYYK 398
Cdd:PLN03081 342 EHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFdrMPRKNL------ISWNALIAGYGNHGRGTKAVEMFE 415

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 399 ELKRRGYMPNSSNLFTLINlqakhedeagtlktlndmlkiGCRPSSIVgnvlqayekaRRMKSVPVLLTGSFYRKVLSSQ 478
Cdd:PLN03081 416 RMIAEGVAPNHVTFLAVLS---------------------ACRYSGLS----------EQGWEIFQSMSENHRIKPRAMH 464

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 479 TSCSILVMAyvKHCLVDDALKVLREKEWKDhhfEENLYHLLICSCK-----ELGHLEnAIKIYTQLPKRENKpnlhiTCT 553
Cdd:PLN03081 465 YACMIELLG--REGLLDEAYAMIRRAPFKP---TVNMWAALLTACRihknlELGRLA-AEKLYGMGPEKLNN-----YVV 533

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 554 MIDIYSIMGRFSDGEKLYLSLRSSGIPLDLIAYNVVVR------------------MYVKAGSLEDACSVLDLMAEQQDI 615
Cdd:PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKkqdhsffsgdrlhpqsreIYQKLDELMKEISEYGYVAEENEL 613


                 ....*
gi 449457967 616 VPDIY 620
Cdd:PLN03081 614 LPDVD 618
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 302-351 4.45e-08

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 50.05  E-value: 4.45e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 449457967  302 PNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGK 351
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 815-866 7.19e-08

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 50.05  E-value: 7.19e-08
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|..
gi 449457967  815 VLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITY 866
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTY 53
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 823-855 1.43e-07

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 48.11  E-value: 1.43e-07
                          10        20        30
                  ....*....|....*....|....*....|...
gi 449457967  823 GLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMR 855
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELLDEME 34
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 829-862 2.68e-07

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 47.45  E-value: 2.68e-07
                          10        20        30
                  ....*....|....*....|....*....|....
gi 449457967  829 YSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPD 862
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 792-838 8.26e-07

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 46.59  E-value: 8.26e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*..
gi 449457967  792 DHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAY 838
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGL 48
PLN03077 PLN03077
Protein ECB2; Provisional
 308-862 1.03e-06

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 52.54  E-value: 1.03e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 308 VVMLNA----YCQQGKMEEAELVFASMEeagfSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEG 383
Cdd:PLN03077 222 VDVVNAlitmYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA 297

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 384 WGRAGNYKMAEWYYKELKRRGYMPNSSNLFTLInlqakhedeagtlktlndmlkigcrpssivgnvlQAYEKARRMKSVP 463
Cdd:PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLI----------------------------------QMYLSLGSWGEAE 343

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 464 VLLTGSFYRKVLSSQTscsiLVMAYVKHCLVDDALKVLREKEWKDHHFEENLYHLLICSCKELGHLENAIKiytqlpkre 543
Cdd:PLN03077 344 KVFSRMETKDAVSWTA----MISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVK--------- 410

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 544 nkpnLHitctmidiysimgRFSDgeklylslrSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEqQDIVPDIYLLR 623
Cdd:PLN03077 411 ----LH-------------ELAE---------RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE-KDVISWTSIIA 463

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 624 DmLRIYQRCGMvhklADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGKSK 703
Cdd:PLN03077 464 G-LRLNNRCFE----ALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538

                        410       420       430       440       450       460       470       480
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 704 LFTKARNLFGLAQKrglvDAISYNTMISVYGKNKD-------FKNM---------------------SSTV-------QK 748
Cdd:PLN03077 539 RMNYAWNQFNSHEK----DVVSWNILLTGYVAHGKgsmavelFNRMvesgvnpdevtfisllcacsrSGMVtqgleyfHS 614

                        490       500       510       520       530       540       550       560
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 749 MKFN-GFSVSLEAYNCMLDAYGKECQMENFRSVLQRMQETSsecDHYTYNIMIN---IYGEQGWIDEVAEVLTElkacgL 824
Cdd:PLN03077 615 MEEKySITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP---DPAVWGALLNacrIHRHVELGELAAQHIFE-----L 686

                        570       580       590
                 ....*....|....*....|....*....|....*....
gi 449457967 825 EPDLYSYNTLI-KAYGIAGMVEEAAQLVKEMREKRIEPD 862
Cdd:PLN03077 687 DPNSVGYYILLcNLYADAGKWDEVARVRKTMRENGLTVD 725
PLN03077 PLN03077
Protein ECB2; Provisional
 241-711 2.56e-06

Protein ECB2; Provisional


Pssm-ID: 215561 [Multi-domain]  Cd Length: 857  Bit Score: 51.39  E-value: 2.56e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 241 LMGLYQKKCDIKESEFAFNQMRNFGIVcetAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKM 320
Cdd:PLN03077 228 LITMYVKCGDVVSARLVFDRMPRRDCI---SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 321 EEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFlgiknSGVE-PDETTYRSMIEGWGRAGNYKMAEWYYKE 399
Cdd:PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVF-----SRMEtKDAVSWTAMISGYEKNGLPDKALETYAL 379

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 400 LKRRGYMPNSSNLFTLINLQAkhedeagTLKTLNDMLKIGcrpssivgnvlQAYEKARRMKSVPVlltgsfyrkvlssqt 479
Cdd:PLN03077 380 MEQDNVSPDEITIASVLSACA-------CLGDLDVGVKLH-----------ELAERKGLISYVVV--------------- 426

                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 480 sCSILVMAYVKHCLVDDALKVLREKEWKDhhfeeNLYHLLICSCKELGHLENAIKIYTQLPKRENKPNlhiTCTMIDIYS 559
Cdd:PLN03077 427 -ANALIEMYSKCKCIDKALEVFHNIPEKD-----VISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPN---SVTLIAALS 497

                        330       340       350       360       370       380       390       400
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 560 I---MGRFSDGEKLYLSLRSSGIPLDLIAYNVVVRMYVKAGSLEDACSVLDLMAEqqdivpDIYLLRDMLRIYQRCGMVH 636
Cdd:PLN03077 498 AcarIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK------DVVSWNILLTGYVAHGKGS 571

                        410       420       430       440       450       460       470
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 449457967 637 KLADLYYRILKSGVSWDQEMYNCVINCCSRALPVDELSRLFDEM-LQCGFAPNTVTLNVMLDVYGKSKLFTKARNL 711
Cdd:PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMeEKYSITPNLKHYACVVDLLGRAGKLTEAYNF 647
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 181-405 4.27e-06

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 50.64  E-value: 4.27e-06
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 181 DAAEKLIEEVRAELGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLMGLYQKKCDIKESEFAFNQ 260
Cdd:PLN03081 104 REALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 261 M--RNfgivcETAYASMITIYIRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNA------------------------- 313
Cdd:PLN03081 184 MpeRN-----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAsaglgsaragqqlhccvlktgvvgd 258

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 314 ----------YCQQGKMEEAELVFASMEEAgfssNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMIEG 383
Cdd:PLN03081 259 tfvscalidmYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334

                        250       260
                 ....*....|....*....|..
gi 449457967 384 WGRAGNYKMAEWYYKELKRRGY 405
Cdd:PLN03081 335 FSRLALLEHAKQAHAGLIRTGF 356
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 760-801 1.48e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.74  E-value: 1.48e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|..
gi 449457967  760 AYNCMLDAYGKECQMENFRSVLQRMQETSSECDHYTYNIMIN 801
Cdd:pfam13041   5 TYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILIN 46
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 829-859 1.92e-05

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 42.07  E-value: 1.92e-05
                          10        20        30
                  ....*....|....*....|....*....|.
gi 449457967  829 YSYNTLIKAYGIAGMVEEAAQLVKEMREKRI 859
Cdd:pfam01535   1 VTYNSLISGYCKNGKLEEALELFKEMKEKGI 31
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 657-701 2.23e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 42.35  E-value: 2.23e-05
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*
gi 449457967  657 YNCVINCCSRALPVDELSRLFDEMLQCGFAPNTVTLNVMLDVYGK 701
Cdd:pfam13041   6 YNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 687-735 8.02e-05

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 40.81  E-value: 8.02e-05
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|
gi 449457967  687 PNTVTLNVMLDVYGKSKLFTKARNLFGLAQKRGLV-DAISYNTMISVYGK 735
Cdd:pfam13041   1 PDVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKpNVYTYTILINGLCK 50
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 794-827 1.33e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 39.75  E-value: 1.33e-04
                          10        20        30
                  ....*....|....*....|....*....|....
gi 449457967  794 YTYNIMINIYGEQGWIDEVAEVLTELKACGLEPD 827
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 291-351 1.59e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 40.42  E-value: 1.59e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 449457967  291 VIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGK 351
Cdd:pfam13812   2 ILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGG 62
PPR_2 pfam13041
PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is ...
 722-770 3.15e-04

PPR repeat family; This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR.


Pssm-ID: 463778 [Multi-domain]  Cd Length: 50  Bit Score: 39.27  E-value: 3.15e-04
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 449457967  722 DAISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGK 770
Cdd:pfam13041   2 DVVTYNTLINGYCKKGKVEEAFKLFNEMKKRGVKPNVYTYTILINGLCK 50
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 779-839 3.63e-04

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 39.65  E-value: 3.63e-04
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|.
gi 449457967  779 SVLQRMQETSSECDHYTYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYG 839
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIG 61
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 307-339 5.48e-04

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 38.21  E-value: 5.48e-04
                          10        20        30
                  ....*....|....*....|....*....|...
gi 449457967  307 WVVMLNAYCQQGKMEEAELVFASMEEAGFSSNI 339
Cdd:TIGR00756   3 YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
PPR pfam01535
PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up ...
 307-335 6.32e-04

PPR repeat; This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309 that may be involved in RNA stabilization. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein Swiss:O49549 that has a domain organization similar to the human BRCA1 protein. The repeat has been called PPR.


Pssm-ID: 366695 [Multi-domain]  Cd Length: 31  Bit Score: 37.83  E-value: 6.32e-04
                          10        20
                  ....*....|....*....|....*....
gi 449457967  307 WVVMLNAYCQQGKMEEAELVFASMEEAGF 335
Cdd:pfam01535   3 YNSLISGYCKNGKLEEALELFKEMKEKGI 31
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 201-381 1.50e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 42.56  E-value: 1.50e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  201 QVFNTLIYACYKSRFVEQGTKWFRMMLECQVQPNVATFGMLMGLYQKKCDIKESEFAFNQMRNFGIVCET-AYASMITIY 279
Cdd:PLN03218  615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTvSYSSLMGAC 694

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  280 IRMNLYDKAEEVIQLMQEDKVIPNLENWVVMLNAYCQQGKMEEAELVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQ 359
Cdd:PLN03218  695 SNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGL 774

                         170       180
                  ....*....|....*....|..
gi 449457967  360 RLFLGIKNSGVEPDETTYRSMI 381
Cdd:PLN03218  775 DLLSQAKEDGIKPNLVMCRCIT 796
PPR_1 pfam12854
PPR repeat; This family matches additional variants of the PPR repeat that were not captured ...
 334-362 1.76e-03

PPR repeat; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known.


Pssm-ID: 403914 [Multi-domain]  Cd Length: 34  Bit Score: 36.55  E-value: 1.76e-03
                          10        20
                  ....*....|....*....|....*....
gi 449457967  334 GFSSNIIAYNTLITGYGKASNMDTAQRLF 362
Cdd:pfam12854   2 GLKPDVVTYNTLINGLCRAGRVDEAFELL 30
PLN03081 PLN03081
pentatricopeptide (PPR) repeat-containing protein; Provisional
 163-336 2.13e-03

pentatricopeptide (PPR) repeat-containing protein; Provisional


Pssm-ID: 215563 [Multi-domain]  Cd Length: 697  Bit Score: 41.78  E-value: 2.13e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 163 NVSAYNLVLRVLGRQEDWDAAEKLIEEVRAElGSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLECQ-VQPNVATFGML 241
Cdd:PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAE-GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHrIKPRAMHYACM 468

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 242 MGLYQKKCDIKESeFAFNQMRNFgIVCETAYASMIT---IYIRMNLYDKAEEVIQLMQEDKvipnLENWVVMLNAYCQQG 318
Cdd:PLN03081 469 IELLGREGLLDEA-YAMIRRAPF-KPTVNMWAALLTacrIHKNLELGRLAAEKLYGMGPEK----LNNYVVLLNLYNSSG 542

                        170
                 ....*....|....*...
gi 449457967 319 KMEEAELVFASMEEAGFS 336
Cdd:PLN03081 543 RQAEAAKVVETLKRKGLS 560
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 325-381 2.26e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 37.34  E-value: 2.26e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*..
gi 449457967  325 LVFASMEEAGFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSGVEPDETTYRSMI 381
Cdd:pfam13812   1 SILREMVRDGIQLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAIL 57
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 656-689 2.49e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 36.28  E-value: 2.49e-03
                          10        20        30
                  ....*....|....*....|....*....|....
gi 449457967  656 MYNCVINCCSRALPVDELSRLFDEMLQCGFAPNT 689
Cdd:TIGR00756   2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 176-363 2.51e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 40.87  E-value: 2.51e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 176 RQEDWDAAEKLIEEVRAElgSQLDFQVFNTLIYACYKSRFVEQGTKWFRMMLEcqVQPNVATFGMLMG-LYQKKCDIKES 254
Cdd:COG2956   88 KAGLLDRAEELLEKLLEL--DPDDAEALRLLAEIYEQEGDWEKAIEVLERLLK--LGPENAHAYCELAeLYLEQGDYDEA 163

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 255 EFAFNQMRNFGIVCETAYASMITIYIRMNLYDKAEEVIQ--LMQEDKVIPNLENwvvMLNAYCQQGKMEEAELVFASMEE 332
Cdd:COG2956  164 IEALEKALKLDPDCARALLLLAELYLEQGDYEEAIAALEraLEQDPDYLPALPR---LAELYEKLGDPEEALELLRKALE 240

                        170       180       190
                 ....*....|....*....|....*....|.
gi 449457967 333 AGfsSNIIAYNTLITGYGKASNMDTAQRLFL 363
Cdd:COG2956  241 LD--PSDDLLLALADLLERKEGLEAALALLE 269
PLN03218 PLN03218
maturation of RBCL 1; Provisional
 795-882 3.01e-03

maturation of RBCL 1; Provisional


Pssm-ID: 215636 [Multi-domain]  Cd Length: 1060  Bit Score: 41.40  E-value: 3.01e-03
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967  795 TYNIMINIYGEQGWIDEVAEVLTELKACGLEPDLYSYNTLIKAYGIAGMVEEAAQLVKEMREKRIEPDRITYINMIRALQ 874
Cdd:PLN03218  439 TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518


                  ....*...
gi 449457967  875 RNDQFLEA 882
Cdd:PLN03218  519 RAGQVAKA 526
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 271-503 5.24e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.71  E-value: 5.24e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 271 AYASMITIYIRMNLYDKAEEVIQ-LMQEDKvipnlENWVVMLN---AYCQQGKMEEAELVFASMEEAGfSSNIIAYNTLI 346
Cdd:COG2956   44 AHLALGNLYRRRGEYDRAIRIHQkLLERDP-----DRAEALLElaqDYLKAGLLDRAEELLEKLLELD-PDDAEALRLLA 117

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 347 TGYGKASNMDTAQRLFLGIKNSGvePDETTYRSMI-EGWGRAGNYKMAEWYYKELkrRGYMPNSSN-LFTLINLQAKHED 424
Cdd:COG2956  118 EIYEQEGDWEKAIEVLERLLKLG--PENAHAYCELaELYLEQGDYDEAIEALEKA--LKLDPDCARaLLLLAELYLEQGD 193

                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 425 EAGTLKTLNDMLKIGCRPSSIVGNVLQAYEKARRMKSVpvlltGSFYRKVLSSQTSCSILVM---AYVKHCLVDDALKVL 501
Cdd:COG2956  194 YEEAIAALERALEQDPDYLPALPRLAELYEKLGDPEEA-----LELLRKALELDPSDDLLLAladLLERKEGLEAALALL 268


                 ..
gi 449457967 502 RE 503
Cdd:COG2956  269 ER 270
PPR TIGR00756
pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR ...
 584-619 5.82e-03

pentatricopeptide repeat domain (PPR motif); This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.


Pssm-ID: 273253 [Multi-domain]  Cd Length: 35  Bit Score: 35.12  E-value: 5.82e-03
                          10        20        30
                  ....*....|....*....|....*....|....*.
gi 449457967  584 IAYNVVVRMYVKAGSLEDACSVLDLMaEQQDIVPDI 619
Cdd:TIGR00756   1 VTYNTLIDGLCKAGRVEEALELFKEM-KERGIEPDV 35
PPR_3 pfam13812
Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat ...
 715-771 7.38e-03

Pentatricopeptide repeat domain; This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. In the case of the Arabidopsis protein UniProtKB:Q66GI4, the repeated helices in this N-terminal region, of protein-only RNase P (PRORP) enzymes, form the pentatricopeptide repeat (PPR) domain which enhances pre-tRNA binding affinity. PROPRP enzymes process precursor tRNAs in human mitochondria and in all tRNA-using compartments of Arabidopsis thaliana.


Pssm-ID: 316342 [Multi-domain]  Cd Length: 63  Bit Score: 35.80  E-value: 7.38e-03
                          10        20        30        40        50
                  ....*....|....*....|....*....|....*....|....*....|....*...
gi 449457967  715 AQKRGL-VDAISYNTMISVYGKNKDFKNMSSTVQKMKFNGFSVSLEAYNCMLDAYGKE 771
Cdd:pfam13812   6 MVRDGIqLNVNTYTHLLHAYANVGNLKLALEIFERMKKKGIKPTLDTYNAILGVIGGR 63
LapB COG2956
Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal ...
 244-437 8.01e-03

Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis];


Pssm-ID: 442196 [Multi-domain]  Cd Length: 275  Bit Score: 39.33  E-value: 8.01e-03
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 244 LYQKKCDIKESEFAFNQMRNFGIVCETAYASMITIYIRMNLYDKAEEVIQLMQEDKviPNLENWVVML-NAYCQQGKMEE 322
Cdd:COG2956   85 DYLKAGLLDRAEELLEKLLELDPDDAEALRLLAEIYEQEGDWEKAIEVLERLLKLG--PENAHAYCELaELYLEQGDYDE 162

                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 449457967 323 AElvfASMEEA--GFSSNIIAYNTLITGYGKASNMDTAQRLFLGIKNSgvEPDET-TYRSMIEGWGRAGNYKMAEWYYKE 399
Cdd:COG2956  163 AI---EALEKAlkLDPDCARALLLLAELYLEQGDYEEAIAALERALEQ--DPDYLpALPRLAELYEKLGDPEEALELLRK 237

                        170       180       190
                 ....*....|....*....|....*....|....*...
gi 449457967 400 LKRRGymPNSSNLFTLINLQAKHEDEAGTLKTLNDMLK 437
Cdd:COG2956  238 ALELD--PSDDLLLALADLLERKEGLEAALALLERQLR 273
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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