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    Prdm4 PR/SET domain 4 [ Cavia porcellus (domestic guinea pig) ]

    Gene ID: 100734481, updated on 8-Mar-2024

    Summary

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    Gene symbol
    Prdm4
    Gene description
    PR/SET domain 4
    See related
    Ensembl:ENSCPOG00000022385
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Cavia porcellus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
    Orthologs
    human mouse all
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    Genomic context

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    See Prdm4 in Genome Data Viewer
    Location:
    chromosome: Un
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947491.1 (94124427..94143455, complement)
    103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176279.1 (469825..488842, complement)

    NW_026947491.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and BTB domain containing 3 Neighboring gene uncharacterized LOC111754263 Neighboring gene PWP1 homolog, endonuclein Neighboring gene RNA 2',3'-cyclic phosphate and 5'-OH ligase Neighboring gene BPI fold containing family C

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables histone methyltransferase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of gene expression IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PR domain zinc finger protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mCavPor4.1

    Genomic

    1. NW_026947491.1 Reference mCavPor4.1

      Range
      94124427..94143455 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023561238.2 → XP_023417006.1  PR domain zinc finger protein 4 isoform X2

      UniProtKB/TrEMBL
      A0A286Y543, H0VZF0
      Related
      ENSCPOP00000032632.1
      Conserved Domains (4) summary
      smart00317
      Location:428 → 535
      SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
      COG5048
      Location:618 → 707
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:622 → 642
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:634 → 659
      zf-H2C2_2; Zinc-finger double domain

    2. XM_063255538.1 → XP_063111608.1  PR domain zinc finger protein 4 isoform X1

    3. XM_063255537.1 → XP_063111607.1  PR domain zinc finger protein 4 isoform X1

    Nucleotide Protein
    Heading Accession and Version

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