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    LOC100034197 Equ c1 [ Equus caballus (horse) ]

    Gene ID: 100034197, updated on 15-Aug-2024

    Summary

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    Gene symbol
    LOC100034197
    Gene description
    Equ c1
    See related
    Ensembl:ENSECAG00000034517
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
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    Genomic context

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    See LOC100034197 in Genome Data Viewer
    Location:
    chromosome: 25
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current EquCab3.0 (GCF_002863925.1) 25 NC_009168.3 (18315130..18319273, complement)

    Chromosome 25 - NC_009168.3Genomic Context describing neighboring genes Neighboring gene calicin-like Neighboring gene major allergen Equ c 1 Neighboring gene calicin-like Neighboring gene major allergen Equ c 1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_009168.3 Chromosome 25 Reference EquCab3.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biochemical characterization and surfactant properties of horse allergens. Goubran Botros H, et al. Eur J Biochem, 2001 May. PMID 11358533
    2. Crystal structure of the allergen Equ c 1. A dimeric lipocalin with restricted IgE-reactive epitopes. Lascombe MB, et al. J Biol Chem, 2000 Jul 14. PMID 10787420
    3. cDNA cloning and sequencing reveal the major horse allergen Equ c1 to be a glycoprotein member of the lipocalin superfamily. Gregoire C, et al. J Biol Chem, 1996 Dec 20. PMID 8955138
    4. Species specificity in major urinary proteins by parallel evolution. Logan DW, et al. PLoS One, 2008 Sep 25. PMID 18815613, Free PMC Article
    5. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables odorant binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables small molecule binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    major allergen Equ c 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001082497.2 → NP_001075966.1  major allergen Equ c 1 precursor

      See identical proteins and their annotated locations for NP_001075966.1

      Status: PROVISIONAL

      Source sequence(s)
      U70823
      UniProtKB/Swiss-Prot
      Q95182
      Related
      ENSECAP00000000397.2, ENSECAT00000000508.3
      Conserved Domains (1) summary
      pfam00061
      Location:34 → 174
      Lipocalin; Lipocalin / cytosolic fatty-acid binding protein family

    RefSeqs of Annotated Genomes: GCF_002863925.1-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009168.3 Reference EquCab3.0 Primary Assembly

      Range
      18315130..18319273 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q95182.1 GenPept UniProtKB/Swiss-Prot:Q95182

    Gene LinkOut

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    Research Materials