4ES7,2CZU,3S26,4K19,3SAO,1FEM,1OBQ,1GKA,2HZR,1N0S,2OVA,3BLG,1EXS,2R73,3L4R,1HN2,1DZJ,1BJ7,3FIQ,1E5P,1GM6,1EW3,2A2U,1ZNK,3APV,3IFB,2LFO,2FTB,1P6P,1EAL,1GGL,4QYP,1KQX,1O8V,1FDQ,2FLJ,1MDC,2WWP,4RUN,1Z24,2CBS,3NR3


Conserved Protein Domain Family
Lipocalin

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pfam00061: Lipocalin (this model, PSSM-Id:278490 is obsolete and has been replaced by 395015)
Click on image for an interactive view with Cn3D
Lipocalin / cytosolic fatty-acid binding protein family
Lipocalins are transporters for small hydrophobic molecules, such as lipids, steroid hormones, bilins, and retinoids. The family also encompasses the enzyme prostaglandin D synthase (EC:5.3.99.2). Alignment subsumes both the lipocalin and fatty acid binding protein signatures from PROSITE. This is supported on structural and functional grounds. The structure is an eight-stranded beta barrel.
Statistics
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PSSM-Id: 278490
Aligned: 159 rows
Threshold Bit Score: 27.7926
Created: 10-Jun-2015
Updated: 5-Aug-2015
Structure
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Program:
Drawing:
Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
4ES7_A        49 YGKWYNLAIGStcp-wlKKIMDRMTVSTLVLGEGaTEAEISMTSTRW--------RKGVCEETSGAYEKTDTDGKFLYHK 119 human
P11944        16 VGSWYLREAAKt----mEFSIPLFDMDIKEVNLT-PEGNLELVLLEK--------TDR-CVEKKLLLKKTKKPTEFEIY- 80  eastern gray ka...
P19647        16 AGRWHSVAMVAsdisllDSESAPLRVYVEELRPT-PEGNLEIILREG--------ANHVCVERNIVAQKTEDPAVFTVN- 85  ass
P21664        16 AGTWHSMAMAAsdisllDSETAPLRVYVQELRPT-PRDNLEIILRKR--------ENHACIEGNIMAQRTEDPAVFMVD- 85  domestic cat
3BLG_A        16 AGTWYSLAMAAsdisllDAQSAPLRVYVEELKPT-PEGDLEILLQKW--------ENDECAQKKIIAEKTKIPAVFKID- 85  cattle
O97877         9 AGTWHSMAMAAsdisllDSETAPLRVYVQELRPT-PRDNLEIILRKW--------EHGRCVQKKVWAEKTELLAEFKIS- 78  domestic cat
P33685        16 AGTWHSMAMAAsdisllDSETAPLRVYIQELRPT-PQDNLEIVLRKW--------EDGRCAEQKVLAEKTEVPAEFKIN- 85  dog
O77511        34 AGTWHSMAMAAsdfsllETKEAPLRIYISSLQPT-PEGNLEIVLRRWsqkqspfrDSNQCIEEKIIAEKTENPIEFKIN- 111 Yellow baboon
P13613        16 AGKWHSVAMAAsdisllDSEEAPLRVYIEKLRPT-PEDNLEIILREG--------ENKGCAEKKIFAEKTESPAEFKIN- 85  ass
NP_001018059  34 AGTWHSMAMATnnislmATLKAPLRVHITSLLPT-PEDNLEIVLHRW--------ENNSCVEKKVLGEKTENPKKFKINY 104 human
4ES7_A       120 SKWNITM--ESYVVHTNYDEYAIFLTKKFSRhHG-PTITAKLYGRAPQLRETLlqdFRVVAQGVGIPEDSIFTMADRG 194 human
P11944        81 --ISSESsyTFCVMETDYDSYFLFCLYNI---SDrEKMACAHYVRRIEENKGmn-eFKKILRTLAMPY--TVIEVRTR 150 eastern gray kang...
P19647        86 --YQGER--KISVLDTDYAHYMFFCVGPC-LpSAeHGMVCQYLARTQKVDEEVmekFSRALQPLPGHVQIIQDPSGGQ 158 ass
P21664        86 --YQGEK--KISVLDTDYTHYMFFCMEAP-ApGTeNGMMCQYLARTLKADNEVmekFDRALQTLPVHIRIILDLTQGK 158 domestic cat
3BLG_A        86 --ALNEN--KVLVLDTDYKKYLLFCMENSAEpE--QSLVCQCLVRTPEVDDEAlekFDKALKALPMHIRLSFNPTQLE 157 cattle
O97877        79 --YLDEN--ELIVLDTDYENYLFFCLENTDApG--QNLVCQCLTRTLKADNEVmekFDRALQTLPVDVRLFFDPTQVA 150 domestic cat
P33685        86 --YVEEN--QIFLLDTDYDNYLFFCEMNADApQ--QSLMCQCLARTLEVDNEVmekFNRALKTLPVHMQ-LLNPTQAE 156 dog
O77511       112 --YLDEN--RIYLFNTDGSKYLFLCLESTRR----QNLACQYLARTLEVDDKVmaeFISFLKTLPVHMQIFLDMTQAE 181 Yellow baboon
P13613        86 --YLDED--TVFALDSDYKNYLFLCMKNAATpG--QSLVCQYLARTQMVDEEImekFRRALQPLPGRVQIVPDLTRMA 157 ass
NP_001018059 105 TVA---N--EATLLDTDYDNFLFLCLQDTTT-PI-QSMMCQYLARVLVEDDEImqgFIRAFRPLPRHLWYLLDLKQME 175 human
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