Protein Family Models for Protein (Select 981243076) - Protein Family Models

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Select item 4250631.

4Fe-4S dicluster domain-containing protein

This family includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. The structure of the domain is an alpha-antiparallel beta sandwich. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF024634.5
Method:: HMM

Select item 4229422.

4Fe-4S dicluster domain-containing protein

Superfamily includes proteins containing domains which bind to iron-sulfur clusters. Members include bacterial ferredoxins, various dehydrogenases, and various reductases. Structure of the domain is an alpha-antiparallel beta sandwich. Domain contains two 4Fe4S clusters. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF024247.5
Method:: HMM

Select item 4227613.

2Fe-2S iron-sulfur cluster-binding protein

The 2Fe-2S ferredoxin family have a general core structure consisting of beta(2)-alpha-beta(2) which a beta-grasp type fold. The domain is around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This cluster appears within sarcosine oxidase proteins. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF024900.5
Method:: HMM

Select item 4200624.

NADH-ubiquinone oxidoreductase-G iron-sulfur binding region

GO Terms:

Molecular Function:: oxidoreductase activity (GO:0016491)

Date:: 2024-08-14

Family Accession:: NF022058.5
Method:: HMM

Select item 4149705.

Molybdopterin oxidoreductase Fe4S4 domain

This domain is found in formate dehydrogenase H for which the structure is known. This first domain (residues 1 to 60) of PDB:1aa6 is an Fe4S4 cluster just below the protein surface [1]. [1]. 9036855. Crystal structure of formate dehydrogenase H: catalysis. involving Mo, molybdopterin, selenocysteine, and an Fe4S4. cluster.. Boyington JC, Gladyshev VN, Khangulov SV, Stadtman TC, Sun PD;. Science. 1997;275:1305-1308. (from Pfam)

GO Terms:

Molecular Function:: oxidoreductase activity (GO:0016491)

Date:: 2024-08-14

Family Accession:: NF016750.5
Method:: HMM

Select item 4127036.

molybdopterin dinucleotide binding domain-containing protein

This domain is found in various molybdopterin - containing oxidoreductases and tungsten formylmethanofuran dehydrogenase subunit d (FwdD) and molybdenum formylmethanofuran dehydrogenase subunit (FmdD); where the domain constitutes almost the entire subunit. The formylmethanofuran dehydrogenase catalyses the first step in methane formation from CO2 in methanogenic archaea and has a molybdopterin dinucleotide cofactor [1]. This domain corresponds to the C-terminal domain IV in dimethyl sulfoxide (DMSO)reductase which interacts with the 2-amino pyrimidone ring of both molybdopterin guanine dinucleotide molecules [2]. [1]. 9818358. The formylmethanofuran dehydrogenase isoenzymes in. Methanobacterium wolfei and Methanobacterium. thermoautotrophicum: induction of the molybdenum isoenzyme by. molybdate and constitutive synthesis of the tungsten isoenzyme.. Hochheimer A, Hedderich R, Thauer RK;. Arch Microbiol 1998;170:389-393.. [2]. 8890912. Crystal structure of dimethyl sulfoxide reductase from. Rhodobacter capsulatus at 1.88 A resolution.. Schneider F, Lowe J, Huber R, Schindelin H, Kisker C, Knablein. J;. J Mol Biol 1996;263:53-69. (from Pfam)

GO Terms:

Molecular Function:: oxidoreductase activity (GO:0016491)

Molecular Function:: molybdopterin cofactor binding (GO:0043546)

Date:: 2024-08-14

Family Accession:: NF013717.5
Method:: HMM

Select item 4110277.

4Fe-4S binding protein

Date:: 2024-08-14

Family Accession:: NF012267.5
Method:: HMM

Select item 4109028.

molybdopterin-dependent oxidoreductase

GO Terms:

Molecular Function:: oxidoreductase activity (GO:0016491)

Date:: 2024-08-14

Family Accession:: NF012602.5
Method:: HMM

Select item 3991929.