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integrase arm-type DNA-binding domain-containing protein
The domain found by this HMM, previously named DUF4102, is found often phage intergrases and predicted to bind arm-type integrase binding sites.
Phage integrase, N-terminal SAM-like domain
This domain is found in a variety of phage integrase proteins. (from Pfam)
tyrosine-type recombinase/integrase
Members of this family cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment. The catalytic site residues in CRE recombinase (Swiss:P06956) are Arg-173, His-289, Arg-292 and Tyr-324. [1]. 9082984. Flexibility in DNA recombination: structure of the lambda. integrase catalytic core.. Kwon HJ, Tirumalai R, Landy A, Ellenberger T;. Science 1997;276:126-131.. [2]. 9288963. Structure of Cre recombinase complexed with DNA in a. site-specific recombination synapse.. Guo F, Gopaul DN, van Duyne GD;. Nature 1997;389:40-46. (from Pfam)
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