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Links from Protein

Items: 10

1.

OB-fold nucleic acid binding domain-containing protein

This family contains OB-fold domains that bind to nucleic acids [4]. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See Pfam:PF00152). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a hetero-trimeric complex, that contains a subunit in this family [2,3]. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. [1]. 2047877. Class II aminoacyl transfer RNA synthetases: crystal structure. of yeast aspartyl-tRNA synthetase complexed with tRNA(Asp).. Ruff M, Krishnaswamy S, Boeglin M, Poterszman A, Mitschler A,. Podjarny A, Rees B, Thierry JC, Moras D;. Science 1991;252:1682-1689.. [2]. 7760808. Rpa4, a homolog of the 34-kilodalton subunit of the replication. protein A complex.. Keshav KF, Chen C, Dutta A;. Mol Cell Biol 1995;15:3119-3128.. [3]. 8990123. Structure of the single-stranded-DNA-binding domain of. replication protein A bound to DNA.. Bochkarev A, Pfuetzner RA, Edwards AM, Frappier L;. Nature 1997;385:176-181.. [4]. 10829230. Protein fold recognition using sequence profiles and its. application in structural genomics.. Koonin EV, Wolf YI, Aravind L;. Adv Protein Chem 2000;54:245-275. (from Pfam)

GO Terms:
Molecular Function:
nucleic acid binding (GO:0003676)
Date:
2024-08-14
Family Accession:
NF013499.5
Method:
HMM
2.

amino acid--tRNA ligase-related protein

Members of this family contain a domain found in class II ligases of amino acids to tRNA for protein translation, but also in related proteins such as the EF-P-lysine lysyltransferase EpmA.

GO Terms:
Molecular Function:
nucleotide binding (GO:0000166)
Molecular Function:
aminoacyl-tRNA ligase activity (GO:0004812)
Molecular Function:
ATP binding (GO:0005524)
Biological Process:
tRNA aminoacylation (GO:0043039)
Date:
2024-08-14
Family Accession:
NF012379.5
Method:
HMM
3.
new record, indexing in progress
Family Accession:
4.
new record, indexing in progress
Family Accession:
5.
new record, indexing in progress
Family Accession:
6.
new record, indexing in progress
Family Accession:
7.
new record, indexing in progress
Family Accession:
8.

lysine--tRNA ligase

lysine--tRNA ligase, a class II aminoacyl-tRNA synthetase, catalyzes the specific aminoacylation of tRNA(Lys)

Date:
2024-04-10
Family Accession:
11478797
Method:
Sparcle
9.

lysine--tRNA ligase

Class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1

Date:
2020-10-26
Family Accession:
NF001756.1
Method:
HMM
10.

lysine--tRNA ligase

This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.

Gene:
lysS
GO Terms:
Molecular Function:
lysine-tRNA ligase activity (GO:0004824)
Molecular Function:
ATP binding (GO:0005524)
Cellular Component:
cytoplasm (GO:0005737)
Biological Process:
lysyl-tRNA aminoacylation (GO:0006430)
Date:
2024-05-30
Family Accession:
TIGR00499.1
Method:
HMM
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