Protein Family Models for Protein (Select 489057331) - Protein Family Models

Select item 4318721.

Family in the SLOG superfamily, observed as a standalone domain with little informative genome context, although related families in the SLOG superfamily are predicted to function in diverse conflict contexts [1]. [1]. 26590262. Comparative genomic analyses reveal a vast, novel network of. nucleotide-centric systems in biological conflicts, immunity and. signaling.. Burroughs AM, Zhang D, Schaffer DE, Iyer LM, Aravind L;. Nucleic Acids Res. 2015;43:10633-10654. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF037785.5
Method:: HMM

Select item 4146562.

LOG family protein

The members of this family share a highly conserved motif PGGXGTXXE that is probably functionally important. This family includes proteins annotated as lysine decarboxylases, although the evidence for this is not clear. (from Pfam)

Date:: 2024-08-14

Family Accession:: NF015597.5
Method:: HMM

Select item 4044533.

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Family Accession:

Select item 3908454.

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Family Accession:

Select item 3658805.

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Family Accession:

Select item 3498476.

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Family Accession:

Select item 3277707.

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Family Accession:

Select item 3199158.

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Family Accession:

Select item 1754119.

LOG family protein

LOG (Lonely Guy) family protein similar to Arabidopsis thaliana cytokinin riboside 5'-monophosphate phosphoribohydrolases, which are cytokinin-activating enzymes working in the direct activation pathway, converting inactive cytokinin nucleotides to the biologically active free-base forms

Date:: 2024-04-25

Family Accession:: 10004058
Method:: Sparcle

Select item 2244110.

TIGR00730 family Rossman fold protein

This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this HMM show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.

GO Terms:

Biological Process:: cytokinin biosynthetic process (GO:0009691)

Molecular Function:: hydrolase activity (GO:0016787)

Date:: 2024-05-30

Family Accession:: TIGR00730.1
Method:: HMM

Select item 2093911.

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Family Accession:

Select item 1427112.

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Family Accession:

Select item 1386313.

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Family Accession:

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