Protein Family Models

This domain is the C-terminal ligand binding domain of many members of the GntR family. This domain binds to a range of effector molecules, including Lactate, Zn(II), Ni(II), Ca(II), Mg(II), citrate, sugar acids, sialic acid and N-acetylglucosamine-6-P, that regulate the transcription of genes through the action of the N-terminal DNA-binding domain Pfam:PF00392 (Matilla et. al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043). This domain is found in Swiss:P45427 and Swiss:P31460 that are regulators of sugar biosynthesis operons. It is also in the known structure of FadR where it binds to acyl-coA, the domain is alpha helical [1]. This family has been named as FCD for (FadR C-terminal Domain). [1]. 11013219. Crystal structure of FadR, a fatty acid-responsive transcription. factor with a novel acyl coenzyme A-binding fold.. van Aalten DM, DiRusso CC, Knudsen J, Wierenga RK;. EMBO J 2000;19:5167-5177. (from Pfam)

Date:

2024-08-14

This family of regulatory proteins consists of the N-terminal HTH region of GntR-like bacterial transcription factors. At the C-terminus there is usually an effector-binding/oligomerisation domain. The GntR-like proteins include the following sub-families: MocR, YtrR, FadR, AraR, HutC and PlmA, DevA, DasR [1-2][4][5]. Many of these proteins have been shown experimentally to be autoregulatory, enabling the prediction of operator sites and the discovery of cis/trans relationships [3]. The DasR regulator has been shown to be a global regulator of primary metabolism and development in Streptomyces coelicolor [5]. [1]. 12867439. PlmA, a new member of the GntR family, has plasmid maintenance. functions in Anabaena sp. strain PCC 7120.. Lee MH, Scherer M, Rigali S, Golden JW;. J Bacteriol 2003;185:4315-4325.. [2]. 11756427. Subdivision of the helix-turn-helix GntR family of bacterial. regulators in the FadR, HutC, MocR, and YtrA subfamilies.. Rigali S, Derouaux A, Giannotta F, Dusart J;. J Biol Chem 2002;277:12507-12515.. [3]. 15247334. Extending the classification of bacterial transcription factors. beyond the helix-turn-helix motif as an alternative approach to. discover new cis/trans relationships.. Rigali S, Schlicht M, Hoskisson P, Nothaft H, Merzbacher M,. Joris B, Titgemeyer F;. Nucleic Acids Res 2004;32:3418-3426.. [4]. 16936034. A new GntR family transcriptional regulator in streptomyces. coelicolor is required for morphogenesis and antibiotic. production and controls transcription of an ABC transporter in. response to carbon source.. Hillerich B, Westpheling J;. J Bacteriol. 2006;188:7477-7487.. [5]. 16925557. The sugar. TRUNCATED at 1650 bytes (from Pfam)

Date:

2024-08-14