Protein Family Models

This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins. [1]. 9839468. Molecular characterization of CDSP 34, a chloroplastic protein. induced by water deficit in Solanum tuberosum L. plants, and. regulation of CDSP 34 expression by ABA and high illumination.. Gillet B, Beyly A, Peltier G, Rey P;. Plant J 1998;16:257-262. (from Pfam)

Date:

2024-08-14

In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation [1]. In plants this family includes Swiss:A9X6Y0, which is involved in water permeability in the cuticles of fruit [2]. Swiss:P54797 has been found to be expressed during early embryogenesis in mice [3]. This protein contains a conserved NRDE motif. This gene has been characterised in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2. [1]. 16452979. Functional genomics reveals genes involved in protein secretion. and Golgi organization.. Bard F, Casano L, Mallabiabarrena A, Wallace E, Saito K,. Kitayama H, Guizzunti G, Hu Y, Wendler F, Dasgupta R, Perrimon. N, Malhotra V;. Nature. 2006;439:604-607.. [2]. 17877702. The identification of a gene (Cwp1), silenced during Solanum. evolution, which causes cuticle microfissuring and dehydration. when expressed in tomato fruit.. Hovav R, Chehanovsky N, Moy M, Jetter R, Schaffer AA;. Plant J. 2007;52:627-639.. [3]. 8268909. Isolation of a gene expressed during early embryogenesis from. the region of 22q11 commonly deleted in DiGeorge syndrome.. Halford S, Wilson DI, Daw SC, Roberts C, Wadey R, Kamath S,. Wickremasinghe A, Burn J, Goodship J, Mattei MG, et al.;. Hum Mol Genet 1993;2:1577-1582. (from Pfam)

Date:

2024-08-14

This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers [2]. Patatin is a storage protein but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids [2]. Members of this family have been found also in vertebrates. [1]. 7808402. Solanum brevidens possesses a non-sucrose-inducible patatin. gene.. Banfalvi Z, Kostyal Z, Barta E;. Mol Gen Genet 1994;245:517-522.. [2]. 3371664. Molecular characterization of the patatin multigene family of. potato.. Mignery GA, Pikaard CS, Park WD;. Gene 1988;62:27-44. (from Pfam)

Date:

2024-08-14

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis

Date:

2024-01-19

PLP-dependent threonine dehydratase catalyzes the first deamination step in the degradation of threonine

Date:

2023-03-13

vacuolar protein sorting-associated protein 41 (VPS41) family protein similar to Solanum lycopersicum VPS41 homolog required for vacuolar assembly and vacuolar traffic

Date:

2022-08-23

isocitrate/isopropylmalate dehydrogenases family protein similar to Arabidopsis thaliana isocitrate dehydrogenase (NAD(+)) catalytic subunit, and Solanum tuberosum 3-isopropylmalate dehydrogenase

Date:

2019-10-04

Tm-1-like ATP-binding domain-containing protein is a UPF0261 family protein similar to Solanum lycopersicum Tm-1 protein that binds to ToMV replication proteins and thereby inhibits replication complex formation

Date:

2020-01-10

serine protease inhibitor similar to Solanum tuberosum wound-induced proteinase inhibitor 1 that inhibits both chymotrypsin and trypsin

Date:

2021-05-05

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis; DNA-directed RNA polymerase I subunit RPA1 is the largest and catalytic core component of RNA polymerase I which synthesizes ribosomal RNA precursors

Date:

2017-03-02

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis; DNA-directed RNA polymerase I subunit RPA1 is the largest and catalytic core component of RNA polymerase I which synthesizes ribosomal RNA precursors

Date:

2017-03-02

Tm-1-like ATP-binding domain-containing protein is a UPF0261 family protein similar to Solanum lycopersicum Tm-1 protein that binds to ToMV replication proteins and thereby inhibits replication complex formation

Date:

2020-01-10

serine protease inhibitor similar to Solanum tuberosum wound-induced proteinase inhibitor 1 that inhibits both chymotrypsin and trypsin

Date:

2019-03-21

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis

Date:

2019-09-20

patatin family protein similar to Solanum cardiophyllum patatin-17, a non-specific lipolytic acyl hydrolase catalyzing the hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols including p-nitrophenyl caprate

Date:

2021-06-09

Kunitz-type protease inhibitor similar to Solanum tuberosum aspartic protease inhibitor 8 (also called cathepsin D inhibitor) that may protect the plant by inhibiting proteases of invading organisms

Date:

2021-05-18

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis

Date:

2019-03-21

DCL (defective chloroplasts and leaves protein) family protein is a DUF3223 domain-containing protein; similar to Solanum lycopersicum chloroplastic protein DCL that has a function in the early stage of chloroplast development and palisade cell morphogenesis

Date:

2019-03-21

Tm-1-like ATP-binding domain-containing protein is a UPF0261 family protein similar to Solanum lycopersicum Tm-1 protein that binds to ToMV replication proteins and thereby inhibits replication complex formation

Date:

2020-01-10

Tm-1-like ATP-binding domain-containing protein is a UPF0261 family protein similar to Solanum lycopersicum Tm-1 protein that binds to ToMV replication proteins and thereby inhibits replication complex formation

Date:

2017-03-02