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Study Description

Clonal dynamics during metastasis were studied in two patient-derived xenograft (PDX) models established from treatment-naive primary breast tumors from TNBC patients diagnosed with concurrent metastatic disease. Genomic sequencing and barcode-mediated clonal tracking revealed robust alterations in clonal architecture between primary tumors and metastases. Polyclonal seeding and maintenance of low-abundance subclones was observed in each metastatic lesion examined. Lung, liver, and brain metastases were enriched for an identical population of subclones. Clones dominating multi-organ metastases shared a genomic lineage. Thus, properties of rare mammary tumor subclones enabled the seeding and colonization of metastases in multiple secondary organ sites.

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Study Inclusion/Exclusion Criteria

Patient-derived xenograft models employed in this study were derived from two patients with treatment-naive triple negative breast cancer diagnosed with synchronous metastases.

Molecular Data
TypeSourcePlatformNumber of Oligos/SNPsSNP Batch IdComment
RNA Sequencing Illumina HiSeq 4000 N/A N/A
Whole Exome Sequencing Illumina HiSeq 4000 N/A N/A
Targeted panel DNA sequencing Illumina NextSeq 500/550 Kit v2 N/A N/A
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Diseases/Traits Related to Study (MeSH terms)
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Study Attribution
  • Principal Investigator
    • Helen Piwnica-Worms, PhD. The University of Texas MD Anderson Cancer Center, Houston, TX, USA.