Submitter Handle PERLEGEN Submitter SNP ID PGP04609865 RefSNP(rs#) rs2228145 Submitted Batch ID PGP_29-JAN-2007 Submitted Date Jan 30, 2007 Publication Cited N.D. First entry to dbSNP Jan 30 2007 12:00:00:000AM Resource Links GenBank Accession NC_000001.8 Submitted Gene Name N.D Submitted Gene ID N.D. Submitted SNP Synonyms N.D Submitted linkout N.D Assay Species Homo sapiens Molecular Type Genomic Method PERLEGEN-600K Ascertainment Samplesize 1 Population N.D. Allele Observed Allele A/C Ancestral Allele N.D. Allele Origin A:Germline C:Germline SNP Class SNV CpG Code N.D. Validation Validation Status HWE Goodness of Fit not applicable Variation Frequency Submission N.D. Genotype Summary population count: 4 Genotype Submission N.D. Haplotype N.D.   Fasta sequence   (Legend) >gnl|dbSNP|ss68780517|allelePos=65|len=129|taxid=9606|alleles='A/C'|mol=Genomic TCCTTTTTCT CCATATTCTC CTCTTCCTCC TCTATCTTCA ATTTTTTTTT TAACCTAGTG CAAG M TTCTTCTTCA GTAC CACTGCCCAC ATTCCTGGTT GCTGGAGGGA GCCTGGCCTT CGGAACGCTC   Submitted Frequency for ss68780517 There is no frequency submission for ss68780517.   dbSNP summary of Genotypes for ss68780517 Population ID  -Class Total Sample (2N) Founder (2N) Major Allele Freq. Minor Allele Freq. Genotype Freq. HWE Goodness of Fit Data Source HapMap-CEU 120 120 A=0.64999998 C=0.34999999 A/C=0.46666667 A/A=0.41666666 C/C=0.11666667 Pr(chiSq=0.039,df=1) =1.000 Genotype Freq. HapMap-HCB - EAST ASIA 90 90 A=0.56666666 C=0.43333334 A/C=0.51111114 A/A=0.31111112 C/C=0.17777778 Pr(chiSq=0.075,df=1) =1.000 Genotype Freq. HapMap-JPT 90 90 A=0.57777780 C=0.42222223 A/C=0.53333336 A/A=0.31111112 C/C=0.15555556 Pr(chiSq=0.390,df=1) =0.584 Genotype Freq. HapMap-YRI 120 120 A=0.95833331 C=0.04166667 A/A=0.91666669 A/C=0.08333334 Pr(chiSq=0.009,df=1) =1.000 Genotype Freq.   Submitted individual genotype for ss68780517 There is no individual genotype data for ss68780517.

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