Submitted SNP(ss) Details: ss48295187

Submitted SNP(ss) Details: ss48295187

Submitter
Handle	SNP500CANCER
Submitter SNP ID	IL6R-04
RefSNP(rs#)	rs2228145
Submitted Batch ID	08102005
Submitted Date	Aug 19, 2005
Publication Cited	N.D.
First entry to dbSNP	Aug 19 2005 12:00:00:000AM

Resource Links
GenBank Accession	NT_004487
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	IL6R-04

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	SEQUENCING
Ascertainment Samplesize	204
Population	P1

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	A:Germline C:Germline
SNP Class	SNV
CpG Code	N.D.

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 5
Genotype Summary	population count: 5
Genotype Submission	N.D.
Haplotype	N.D.

Comment
Platform: SequencingPrimer F: CCTGAGCTTGAGGTGTCTCTCT, Temp: 60.35, GC Content:55, Product Size: 510Primer R: GTGTGTGTTGTGGTGTGTGC, Temp: 59.7, GC Content:55 Platform: TaqManForward primer: CTAGTGCAAGATTCTT, Amount: 900 nMReverse primer: GGAATGTGGGCAGTGGTACT, Amount: 900 nMProbe 1: TAGTGCAAGCTTCTT, Amount: 200 nMProbe 2: TCTCCATATTCTCCTCTTCCTCCTCTA, Amount: 200 nMAnnealing temperature: C

Fasta sequence (Legend)

 AAWTTTTTTT TTAACCTAGT GCAAG
 M
 TTCTTCTTCA GTACCACTGC CCACATTCCT GGTTGCTGGA GGGAGCCTGG CCTTCGGAAC
 GCTCCTCTGC ATTGCCATTR TTCTGAGGTG AGATGGGTCC CAGGGGATGG CCCTGTGGTG
 TTCTCATATT TCTTATCTAG CTTTCCTTTG CCCATTCTGA AATTTA

Submitted Frequency for ss48295187

Population ID -Class	Sample (2n)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	Submission Batch	Submitter
P1 - MULTI-NATIONAL	198	A=0.68699998	C=0.31299999	A/A=0.52499998 A/C=0.32300001 C/C=0.15200000	08102005	SNP500CANCER
PAC1 - MULTI-NATIONAL	48	A=0.75000000	C=0.25000000	A/A=0.58300000 A/C=0.33300000 C/C=0.08400000	08102005	SNP500CANCER
AFR1 - MULTI-NATIONAL	48	A=0.89600003	C=0.10400000	A/A=0.83300000 A/C=0.12500000 C/C=0.04200000	08102005	SNP500CANCER
CAUC1 - MULTI-NATIONAL	56	A=0.58899999	C=0.41100001	A/A=0.39300001 A/C=0.39300001 C/C=0.21400000	08102005	SNP500CANCER
HISP1 - MULTI-NATIONAL	46	A=0.52200001	C=0.47799999	A/C=0.43500000 A/A=0.30399999 C/C=0.26100001	08102005	SNP500CANCER

dbSNP summary of Genotypes for ss48295187

No sufficient data to compute Hardy-weinberg probability for ss48295187.

Submitted individual genotype for ss48295187

There is no individual genotype data for ss48295187.

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