PMC Links for Taxonomy (Select 939928) - PMC

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Items: 17

Select item 69562251.

Rhizosphere Metagenomics of Paspalum scrobiculatum L. (Kodo Millet) Reveals Rhizobiome Multifunctionalities

Ratna Prabha, Dhananjaya P. Singh, Shailendra Gupta, Vijai Kumar Gupta, Hesham A. El-Enshasy, Mukesh K. Verma

Microorganisms. 2019 Dec; 7(12): 608. Published online 2019 Nov 23. doi: 10.3390/microorganisms7120608

PMCID:: PMC6956225

Abstract Article PDF–2.5M

Select item 66769152.

Metagenomic Functional Shifts to Plant Induced Environmental Changes

Svetlana N. Yurgel, Jacob T. Nearing, Gavin M. Douglas, Morgan G. I. Langille

Front Microbiol. 2019; 10: 1682. Published online 2019 Jul 26. doi: 10.3389/fmicb.2019.01682

PMCID:: PMC6676915

Abstract Article PDF–3.2M

Select item 66605713.

Soil 16S DNA sequence data and corresponding soil property and wheat yield data from a 72-plot field experiment involving pulses and wheat crops grown in rotations in the semiarid prairie

Chantal Hamel, Yantai Gan, Duaine Messer, Luke D. Bainard

Data Brief. 2019 Apr; 23: 103790. Published online 2019 Feb 28. doi: 10.1016/j.dib.2019.103790

PMCID:: PMC6660571

Abstract Article PDF–220K

Select item 64618384.

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

Xiaogang Li, Alexandre Jousset, Wietse de Boer, Víctor J. Carrión, Taolin Zhang, Xingxiang Wang, Eiko E. Kuramae

ISME J. 2019 Mar; 13(3): 738–751. Published online 2018 Oct 27. doi: 10.1038/s41396-018-0300-0

PMCID:: PMC6461838

Abstract Article PDF–1.3M

Select item 62328755.

Plant Phenotypic Traits Eventually Shape Its Microbiota: A Common Garden Test

Yunshi Li, Xiukun Wu, Tuo Chen, Wanfu Wang, Guangxiu Liu, Wei Zhang, Shiweng Li, Minghao Wang, Changming Zhao, Huaizhe Zhou, Gaosen Zhang

Front Microbiol. 2018; 9: 2479. Published online 2018 Nov 6. doi: 10.3389/fmicb.2018.02479

PMCID:: PMC6232875

Abstract Article PDF–3.9M

Select item 61574096.

Bacterial diversity in rhizosphere of Paspalum scrobiculatum L. (kodo millet) is revealed with shotgun metagenome sequencing and data analysis

Ratna Prabha, Dhananjaya P. Singh, Mukesh K. Verma, Pramod Sahu, Prafull Kumar

Data Brief. 2018 Oct; 20: 1653–1657. Published online 2018 Sep 7. doi: 10.1016/j.dib.2018.09.006

PMCID:: PMC6157409

Abstract Article PDF–596K

Select item 47518337.

Novel Rhizosphere Soil Alleles for the Enzyme 1-Aminocyclopropane-1-Carboxylate Deaminase Queried for Function with an In Vivo Competition Assay

Zhao Jin, Sara C. Di Rienzi, Anders Janzon, Jeff J. Werner, Largus T. Angenent, Jeffrey L. Dangl, Douglas M. Fowler, Ruth E. Ley

Appl Environ Microbiol. 2016 Feb 15; 82(4): 1050–1059. Prepublished online 2015 Dec 4. Published online 2016 Feb 5. doi: 10.1128/AEM.03074-15

PMCID:: PMC4751833

Abstract Article PDF–2.3M

Select item 47026418.

Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes

Jiarong Guo, James R. Cole, Qingpeng Zhang, C. Titus Brown, James M. Tiedje

Appl Environ Microbiol. 2016 Jan 1; 82(1): 157–166. Prepublished online 2015 Oct 16. Published online 2015 Dec 22. doi: 10.1128/AEM.02772-15

PMCID:: PMC4702641

Abstract Article PDF–715K

Select item 45227249.

Diversified diazotrophs associated with the rhizosphere of Western Indian Himalayan native red kidney beans (Phaseolus vulgaris L.)

Deep Chandra Suyal, Amit Yadav, Yogesh Shouche, Reeta Goel

3 Biotech. 2015 Aug; 5(4): 433–441. Published online 2014 Jul 24. doi: 10.1007/s13205-014-0238-5

PMCID:: PMC4522724

Abstract Article PDF–1024K

Select item 436295910.

Structure and Function of the Bacterial Root Microbiota in Wild and Domesticated Barley

Davide Bulgarelli, Ruben Garrido-Oter, Philipp C. Münch, Aaron Weiman, Johannes Dröge, Yao Pan, Alice C. McHardy, Paul Schulze-Lefert

Cell Host Microbe. 2015 Mar 11; 17(3): 392–403. doi: 10.1016/j.chom.2015.01.011

PMCID:: PMC4362959

Abstract Article

Select item 416732911.

Unravelling the Carbon and Sulphur Metabolism in Coastal Soil Ecosystems Using Comparative Cultivation-Independent Genome-Level Characterisation of Microbial Communities

Basit Yousuf, Raghawendra Kumar, Avinash Mishra, Bhavanath Jha

PLoS One. 2014; 9(9): e107025. Published online 2014 Sep 16. doi: 10.1371/journal.pone.0107025

PMCID:: PMC4167329

Abstract Article PDF–2.2M

Select item 408270412.

Taxonomic and functional profiles of soil samples from Atlantic forest and Caatinga biomes in northeastern Brazil

Ralfo G Pacchioni, Fabíola M Carvalho, Claudia E Thompson, André L F Faustino, Fernanda Nicolini, Tatiana S Pereira, Rita C B Silva, Mauricio E Cantão, Alexandra Gerber, Ana T R Vasconcelos, Lucymara F Agnez-Lima

Microbiologyopen. 2014 Jun; 3(3): 299–315. Published online 2014 Apr 4. doi: 10.1002/mbo3.169

PMCID:: PMC4082704

Abstract Article PDF–1.9M

Select item 403323413.

Analysis of plant microbe interactions in the era of next generation sequencing technologies

Claudia Knief

Front Plant Sci. 2014; 5: 216. Published online 2014 May 21. doi: 10.3389/fpls.2014.00216

PMCID:: PMC4033234

Abstract Article PDF–1.1M

Select item 383163414.

Characterization of mineral phosphate solubilization traits from a barley rhizosphere soil functional metagenome

Sagar Chhabra, Dina Brazil, John Morrissey, James I Burke, Fergal O'Gara, David N Dowling

Microbiologyopen. 2013 Oct; 2(5): 717–724. Published online 2013 Jul 25. doi: 10.1002/mbo3.110

PMCID:: PMC3831634

Abstract Article PDF–603K

Select item 337962915.

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

Claudia Knief, Nathanaël Delmotte, Samuel Chaffron, Manuel Stark, Gerd Innerebner, Reiner Wassmann, Christian von Mering, Julia A Vorholt

ISME J. 2012 Jul; 6(7): 1378–1390. Published online 2011 Dec 22. doi: 10.1038/ismej.2011.192

PMCID:: PMC3379629

Abstract Article PDF–679K

Select item 297654416.

Size Does Matter: Application-driven Approaches for Soil Metagenomics

Kavita S. Kakirde, Larissa C. Parsley, Mark R. Liles

Soil Biol Biochem. Author manuscript; available in PMC 2011 Nov 1.

Published in final edited form as: Soil Biol Biochem. 2010 Nov 1; 42(11): 1911–1923. doi: 10.1016/j.soilbio.2010.07.021

PMCID:: PMC2976544

Abstract Article PDF–125K

Select item 222772817.

Forest Soil Metagenome Gene Cluster Involved in Antifungal Activity Expression in Escherichia coli

Eu Jin Chung, He Kyoung Lim, Jin-Cheol Kim, Gyung Ja Choi, Eun Jin Park, Myung Hwan Lee, Young Ryun Chung, Seon-Woo Lee

Appl Environ Microbiol. 2008 Feb; 74(3): 723–730. Published online 2007 Dec 7. doi: 10.1128/AEM.01911-07

PMCID:: PMC2227728

Abstract Article PDF–406K

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