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Select item 63432861.

Genomic and metagenomic insights into the microbial community of a thermal spring

Renato Pedron, Alfonso Esposito, Irene Bianconi, Edoardo Pasolli, Adrian Tett, Francesco Asnicar, Mario Cristofolini, Nicola Segata, Olivier Jousson

Microbiome. 2019; 7: 8. Published online 2019 Jan 23. doi: 10.1186/s40168-019-0625-6

PMCID:: PMC6343286

Abstract Article PDF–3.1M

Select item 62753552.

Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox)

Fei Xia, Jian-Gong Wang, Ting Zhu, Bin Zou, Sung-Keun Rhee, Zhe-Xue Quan

Appl Environ Microbiol. 2018 Dec 15; 84(24): e01390-18. Prepublished online 2018 Oct 12. Published online 2018 Nov 30. doi: 10.1128/AEM.01390-18

PMCID:: PMC6275355

Abstract Article PDF–2.2M

Select item 61928313.

Community dynamics and functional characteristics of naphthalene-degrading populations in contaminated surface sediments and hypoxic/anoxic groundwater

Roland C. Wilhelm, Buck T. Hanson, Subhash Chandra, Eugene Madsen

Environ Microbiol. Author manuscript; available in PMC 2019 Oct 1.

Published in final edited form as: Environ Microbiol. 2018 Jul 26 : 10.1111/1462-2920.14309. Published online 2018 Jul 26. doi: 10.1111/1462-2920.14309

PMCID:: PMC6192831

Abstract Article PDF–1.3M

Select item 59456824.

Regulatory protein SrpA controls phage infection and core cellular processes in Pseudomonas aeruginosa

Jiajia You, Li Sun, Xiaojing Yang, Xuewei Pan, Zhiwei Huang, Xixi Zhang, Mengxin Gong, Zheng Fan, Lingyan Li, Xiaoli Cui, Zhaoyuan Jing, Shouguang Jin, Zhiming Rao, Weihui Wu, Hongjiang Yang

Nat Commun. 2018; 9: 1846. Published online 2018 May 10. doi: 10.1038/s41467-018-04232-6

PMCID:: PMC5945682

Abstract Article PDF–2.2M

Select item 56300205.

Dissection of the molecular circuitry controlling virulence in Francisella tularensis

Bonnie J. Cuthbert, Wilma Ross, Amy E. Rohlfing, Simon L. Dove, Richard L. Gourse, Richard G. Brennan, Maria A. Schumacher

Genes Dev. 2017 Aug 1; 31(15): 1549–1560. doi: 10.1101/gad.303701.117

PMCID:: PMC5630020

Abstract Article PDF–9.5M

Select item 55747746.

Bio-prospecting Bacterial Diversity of Hot Springs in Northern Himalayan Region of India for Laccases

Vijaya Gupta, Naveen Gupta, Neena Capalash, Prince Sharma

Indian J Microbiol. 2017 Sep; 57(3): 285–291. Published online 2017 Jun 20. doi: 10.1007/s12088-017-0656-2

PMCID:: PMC5574774

Abstract Article PDF–1.0M

Select item 55385677.

Measurement of bacterial replication rates in microbial communities

Christopher T. Brown, Matthew R. Olm, Brian C. Thomas, Jillian F. Banfield

Nat Biotechnol. Author manuscript; available in PMC 2017 Aug 1.

Published in final edited form as: Nat Biotechnol. 2016 Dec; 34(12): 1256–1263. Published online 2016 Nov 7. doi: 10.1038/nbt.3704

PMCID:: PMC5538567

Article PDF–1.3M

Select item 53704088.

Bioinformatic Analysis Reveals Archaeal tRNA^Tyr and tRNA^Trp Identities in Bacteria

Takahito Mukai, Noah M. Reynolds, Ana Crnković, Dieter Söll

Life (Basel) 2017 Mar; 7(1): 8. Published online 2017 Feb 21. doi: 10.3390/life7010008

PMCID:: PMC5370408

Abstract Article PDF–2.1M

Select item 51138439.

RubisCO of a nucleoside pathway known from Archaea is found in diverse uncultivated phyla in bacteria

Kelly C Wrighton, Cindy J Castelle, Vanessa A Varaljay, Sriram Satagopan, Christopher T Brown, Michael J Wilkins, Brian C Thomas, Itai Sharon, Kenneth H Williams, F Robert Tabita, Jillian F Banfield

ISME J. 2016 Nov; 10(11): 2702–2714. Published online 2016 May 3. doi: 10.1038/ismej.2016.53

PMCID:: PMC5113843

Abstract Article PDF–1.7M

Select item 500642010.

Conservation of the C-type lectin fold for accommodating massive sequence variation in archaeal diversity-generating retroelements

Sumit Handa, Blair G. Paul, Jeffery F. Miller, David L. Valentine, Partho Ghosh

BMC Struct Biol. 2016; 16(1): 13. Published online 2016 Aug 31. doi: 10.1186/s12900-016-0064-6

PMCID:: PMC5006420

Abstract Article PDF–1.6M

Select item 481726511.

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

Christopher L. Hemme, Stefan J. Green, Lavanya Rishishwar, Om Prakash, Angelica Pettenato, Romy Chakraborty, Adam M. Deutschbauer, Joy D. Van Nostrand, Liyou Wu, Zhili He, I. King Jordan, Terry C. Hazen, Adam P. Arkin, Joel E. Kostka, Jizhong Zhou

mBio. 2016 Mar-Apr; 7(2): e02234-15. Published online 2016 Apr 5. doi: 10.1128/mBio.02234-15

PMCID:: PMC4817265

Abstract Article PDF–4.3M

Select item 462810612.

Comparative metagenomics reveals impact of contaminants on groundwater microbiomes

Christopher L. Hemme, Qichao Tu, Zhou Shi, Yujia Qin, Weimin Gao, Ye Deng, Joy D. Van Nostrand, Liyou Wu, Zhili He, Patrick S. G. Chain, Susannah G. Tringe, Matthew W. Fields, Edward M. Rubin, James M. Tiedje, Terry C. Hazen, Adam P. Arkin, Jizhong Zhou

Front Microbiol. 2015; 6: 1205. Published online 2015 Oct 31. doi: 10.3389/fmicb.2015.01205

PMCID:: PMC4628106

Abstract Article PDF–1.9M

Select item 452990713.

Diverse Reductive Dehalogenases Are Associated with Clostridiales-Enriched Microcosms Dechlorinating 1,2-Dichloroethane

Giuseppe Merlino, Annalisa Balloi, Massimo Marzorati, Francesca Mapelli, Aurora Rizzi, Davide Lavazza, Francesca de Ferra, Giovanna Carpani, Daniele Daffonchio

Biomed Res Int. 2015; 2015: 242856. Published online 2015 Jul 26. doi: 10.1155/2015/242856

PMCID:: PMC4529907

Abstract Article PDF–894K

Select item 450856314.

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle

William C. Nelson, James C. Stegen

Front Microbiol. 2015; 6: 713. Published online 2015 Jul 21. doi: 10.3389/fmicb.2015.00713

PMCID:: PMC4508563

Abstract Article PDF–2.7M

Select item 427241515.

Improved cultivation and metagenomics as new tools for bioprospecting in cold environments

Jan Kjølhede Vester, Mikkel Andreas Glaring, Peter Stougaard

Extremophiles. 2015; 19(1): 17–29. Published online 2014 Nov 16. doi: 10.1007/s00792-014-0704-3

PMCID:: PMC4272415

Abstract Article PDF–1.7M

Select item 405116516.

Ensemble-based classification approach for micro-RNA mining applied on diverse metagenomic sequences

Sherin M ElGokhy, Mahmoud ElHefnawi, Amin Shoukry

BMC Res Notes. 2014; 7: 286. Published online 2014 May 6. doi: 10.1186/1756-0500-7-286

PMCID:: PMC4051165

Abstract Article PDF–644K

Select item 397018917.

Alignment-free Visualization of Metagenomic Data by Nonlinear Dimension Reduction

Cedric C. Laczny, Nicolás Pinel, Nikos Vlassis, Paul Wilmes

Sci Rep. 2014; 4: 4516. Published online 2014 Mar 31. doi: 10.1038/srep04516

PMCID:: PMC3970189

Abstract Article PDF–4.0M

Select item 381526918.

Strategies for discovery and improvement of enzyme function: state of the art and opportunities

Praveen Kaul, Yasuhisa Asano

Microb Biotechnol. 2012 Jan; 5(1): 18–33. Published online 2011 Dec 14. doi: 10.1111/j.1751-7915.2011.00280.x

PMCID:: PMC3815269

Abstract Article PDF–386K

Select item 327302219.

Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site

Stefan J. Green, Om Prakash, Puja Jasrotia, Will A. Overholt, Erick Cardenas, Daniela Hubbard, James M. Tiedje, David B. Watson, Christopher W. Schadt, Scott C. Brooks, Joel E. Kostka

Appl Environ Microbiol. 2012 Feb; 78(4): 1039–1047. doi: 10.1128/AEM.06435-11

PMCID:: PMC3273022

Abstract Article PDF–687K

Select item 286911620.

Denitrifying Bacteria Isolated from Terrestrial Subsurface Sediments Exposed to Mixed-Waste Contamination

Stefan J. Green, Om Prakash, Thomas M. Gihring, Denise M. Akob, Puja Jasrotia, Philip M. Jardine, David B. Watson, Steven D. Brown, Anthony V. Palumbo, Joel E. Kostka

Appl Environ Microbiol. 2010 May; 76(10): 3244–3254. Published online 2010 Mar 19. doi: 10.1128/AEM.03069-09