PMC Links for Taxonomy (Select 547188) - PMC

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Items: 20

Select item 69959991.

Lacipirellula parvula gen. nov., sp. nov., representing a lineage of planctomycetes widespread in low-oxygen habitats, description of the family Lacipirellulaceae fam. nov. and proposal of the orders Pirellulales ord. nov., Gemmatales ord. nov. and Isosphaerales ord. nov.

Svetlana N. Dedysh, Irina S. Kulichevskaya, Alexey V. Beletsky, Anastasia A. Ivanova, W. Irene C. Rijpstra, Jaap S. Sinninghe Damsté, Andrey V. Mardanov, Nikolai V. Ravin

Syst Appl Microbiol. 2020 Jan; 43(1): 126050. doi: 10.1016/j.syapm.2019.126050

PMCID:: PMC6995999

Abstract Article

Select item 69199392.

Calcium exerts a strong influence upon phosphohydrolase gene abundance and phylogenetic diversity in soil

Andrew L. Neal, Margaret J. Glendining

Soil Biol Biochem. 2019 Dec; 139: 107613. doi: 10.1016/j.soilbio.2019.107613

PMCID:: PMC6919939

Abstract Article

Select item 64619013.

Niche-directed evolution modulates genome architecture in freshwater Planctomycetes

Adrian-Ştefan Andrei, Michaela M. Salcher, Maliheh Mehrshad, Pavel Rychtecký, Petr Znachor, Rohit Ghai

ISME J. 2019 Apr; 13(4): 1056–1071. Published online 2019 Jan 4. doi: 10.1038/s41396-018-0332-5

PMCID:: PMC6461901

Abstract Article PDF–1.3M

Select item 61891914.

Host-pathogen biotic interactions shaped vitamin K metabolism in Archaeplastida

U. Cenci, H. Qiu, T. Pillonel, P. Cardol, C. Remacle, C. Colleoni, D. Kadouche, M. Chabi, G. Greub, D. Bhattacharya, S. G. Ball

Sci Rep. 2018; 8: 15243. Published online 2018 Oct 15. doi: 10.1038/s41598-018-33663-w

PMCID:: PMC6189191

Abstract Article PDF–1.7M

Select item 56736345.

Stratified Bacterial and Archaeal Community in Mangrove and Intertidal Wetland Mudflats Revealed by High Throughput 16S rRNA Gene Sequencing

Zhichao Zhou, Han Meng, Yang Liu, Ji-Dong Gu, Meng Li

Front Microbiol. 2017; 8: 2148. Published online 2017 Nov 2. doi: 10.3389/fmicb.2017.02148

PMCID:: PMC5673634

Abstract Article PDF–4.9M

Select item 56351676.

Capabilities and limitations of DGGE for the analysis of hydrocarbonoclastic prokaryotic communities directly in environmental samples

Dina M. Al‐Mailem, Mayada K. Kansour, Samir S. Radwan

Microbiologyopen. 2017 Oct; 6(5): e00495. Published online 2017 May 18. doi: 10.1002/mbo3.495

PMCID:: PMC5635167

Abstract Article PDF–535K

Select item 53810497.

Evolutionary gradient of predicted nuclear localization signals (NLS)-bearing proteins in genomes of family Planctomycetaceae

Min Guo, Ruifu Yang, Chen Huang, Qiwen Liao, Guangyi Fan, Chenghang Sun, Simon Ming-Yuen Lee

BMC Microbiol. 2017; 17: 86. Published online 2017 Apr 4. doi: 10.1186/s12866-017-0981-y

PMCID:: PMC5381049

Abstract Article PDF–2.6M

Select item 53037568.

Three Novel Species with Peptidoglycan Cell Walls form the New Genus Lacunisphaera gen. nov. in the Family Opitutaceae of the Verrucomicrobial Subdivision 4

Patrick Rast, Ines Glöckner, Christian Boedeker, Olga Jeske, Sandra Wiegand, Richard Reinhardt, Peter Schumann, Manfred Rohde, Stefan Spring, Frank O. Glöckner, Christian Jogler, Mareike Jogler

Front Microbiol. 2017; 8: 202. Published online 2017 Feb 13. doi: 10.3389/fmicb.2017.00202

PMCID:: PMC5303756

Abstract Article PDF–4.8M

Select item 50201319.

Distinct Bacterial Communities in Surficial Seafloor Sediments Following the 2010 Deepwater Horizon Blowout

Tingting Yang, Kelly Speare, Luke McKay, Barbara J. MacGregor, Samantha B. Joye, Andreas Teske

Front Microbiol. 2016; 7: 1384. Published online 2016 Sep 13. doi: 10.3389/fmicb.2016.01384

PMCID:: PMC5020131

Abstract Article PDF–5.0M

Select item 483147610.

Bacterial diversity in the surface sediments of the hypoxic zone near the Changjiang Estuary and in the East China Sea

Qi Ye, Ying Wu, Zhuoyi Zhu, Xiaona Wang, Zhongqiao Li, Jing Zhang

Microbiologyopen. 2016 Apr; 5(2): 323–339. Published online 2016 Jan 27. doi: 10.1002/mbo3.330

PMCID:: PMC4831476

Abstract Article PDF–1.1M

Select item 480777211.

Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis

Jay W. Kim, Susan H. Brawley, Simon Prochnik, Mansi Chovatia, Jane Grimwood, Jerry Jenkins, Kurt LaButti, Konstantinos Mavromatis, Matt Nolan, Matthew Zane, Jeremy Schmutz, John W. Stiller, Arthur R. Grossman

PLoS One. 2016; 11(3): e0151883. Published online 2016 Mar 25. doi: 10.1371/journal.pone.0151883

PMCID:: PMC4807772

Abstract Article PDF–3.9M

Select item 456429612.

Ammonia-oxidizing microbial communities in reactors with efficient nitrification at low-dissolved oxygen

Colin M. Fitzgerald, Pamela Camejo, J. Zachary Oshlag, Daniel R. Noguera

Water Res. Author manuscript; available in PMC 2015 Sep 9.

Published in final edited form as: Water Res. 2015 Mar 1; 70: 38–51. Published online 2014 Dec 3. doi: 10.1016/j.watres.2014.11.041

PMCID:: PMC4564296

Abstract Article PDF–1.1M

Select item 455118013.

Stable-Isotope Probing Identifies Uncultured Planctomycetes as Primary Degraders of a Complex Heteropolysaccharide in Soil

Xiaoqing Wang, Christine E. Sharp, Gareth M. Jones, Stephen E. Grasby, Allyson L. Brady, Peter F. Dunfield

Appl Environ Microbiol. 2015 Jul; 81(14): 4607–4615. Prepublished online 2015 May 1. Published online 2015 Jun 19. doi: 10.1128/AEM.00055-15

PMCID:: PMC4551180

Abstract Article PDF–420K

Select item 438128614.

Dispensability of zinc and the putative zinc-binding domain in bacterial glutamyl-tRNA synthetase

Nipa Chongdar, Saumya Dasgupta, Ajit Bikram Datta, Gautam Basu

Biosci Rep. 2015; 35(2): e00184. Prepublished online 2015 Feb 16. Published online 2015 Mar 31. doi: 10.1042/BSR20150005

PMCID:: PMC4381286

Abstract Article PDF–1.6M

Select item 433447415.

Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305^T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended descriptions of the order Planctomycetales and the family Planctomycetaceae

Carmen Scheuner, Brian J Tindall, Megan Lu, Matt Nolan, Alla Lapidus, Jan-Fang Cheng, Lynne Goodwin, Sam Pitluck, Marcel Huntemann, Konstantinos Liolios, Ioanna Pagani, Konstantinos Mavromatis, Natalia Ivanova, Amrita Pati, Amy Chen, Krishna Palaniappan, Cynthia D Jeffries, Loren Hauser, Miriam Land, Romano Mwirichia, Manfred Rohde, Birte Abt, John C Detter, Tanja Woyke, Jonathan A Eisen, Victor Markowitz, Philip Hugenholtz, Markus Göker, Nikos C Kyrpides, Hans-Peter Klenk

Stand Genomic Sci. 2014; 9: 10. Published online 2014 Dec 8. doi: 10.1186/1944-3277-9-10

PMCID:: PMC4334474

Abstract Article PDF–2.1M

Select item 390607816.

Genomic Evolution of 11 Type Strains within Family Planctomycetaceae

Min Guo, Qian Zhou, Yizhuang Zhou, Linfeng Yang, Tianxiang Liu, Jinlong Yang, Yanling Chen, Longxiang Su, Jin Xu, Jing Chen, Feng Liu, Jiapeng Chen, Wenkui Dai, Peixiang Ni, Chengxiang Fang, Ruifu Yang

PLoS One. 2014; 9(1): e86752. Published online 2014 Jan 29. doi: 10.1371/journal.pone.0086752

PMCID:: PMC3906078

Abstract Article PDF–2.5M

Select item 374641817.

Phylogeny-driven target selection for large-scale genome-sequencing (and other) projects

Markus Göker, Hans-Peter Klenk

Stand Genomic Sci. 2013 Jun 15; 8(2): 360–374. Published online 2013 May 20. doi: 10.4056/sigs.3446951

PMCID:: PMC3746418

Abstract Article PDF–1.5M

Select item 358759518.

Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein

Thomas Riedel, Laura Gómez-Consarnau, Jürgen Tomasch, Madeleine Martin, Michael Jarek, José M. González, Stefan Spring, Meike Rohlfs, Thorsten Brinkhoff, Heribert Cypionka, Markus Göker, Anne Fiebig, Johannes Klein, Alexander Goesmann, Jed A. Fuhrman, Irene Wagner-Döbler

PLoS One. 2013; 8(3): e57487. Published online 2013 Mar 4. doi: 10.1371/journal.pone.0057487