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Select item 68434731.

Emerging Species and Genome Editing Tools: Future Prospects in Cyanobacterial Synthetic Biology

Grant A. R. Gale, Alejandra A. Schiavon Osorio, Lauren A. Mills, Baojun Wang, David J. Lea-Smith, Alistair J. McCormick

Microorganisms. 2019 Oct; 7(10): 409. Published online 2019 Sep 29. doi: 10.3390/microorganisms7100409

PMCID:: PMC6843473

Abstract Article PDF–2.1M

Select item 53610632.

Comparison of genomic data via statistical distribution

Saeid Amiri, Ivo Dinov

J Theor Biol. Author manuscript; available in PMC 2017 Oct 21.

Published in final edited form as: J Theor Biol. 2016 Oct 21; 407: 318–327. Published online 2016 Jul 25. doi: 10.1016/j.jtbi.2016.07.032

PMCID:: PMC5361063

Abstract Article PDF–1.3M

Select item 52065363.

Conservation of coevolving protein interfaces bridges prokaryote–eukaryote homologies in the twilight zone

Juan Rodriguez-Rivas, Simone Marsili, David Juan, Alfonso Valencia

Proc Natl Acad Sci U S A. 2016 Dec 27; 113(52): 15018–15023. Published online 2016 Dec 13. doi: 10.1073/pnas.1611861114

PMCID:: PMC5206536

Abstract Article PDF–1.0M

Select item 51185474.

A natural light-driven inward proton pump

Keiichi Inoue, Shota Ito, Yoshitaka Kato, Yurika Nomura, Mikihiro Shibata, Takayuki Uchihashi, Satoshi P. Tsunoda, Hideki Kandori

Nat Commun. 2016; 7: 13415. Published online 2016 Nov 17. doi: 10.1038/ncomms13415

PMCID:: PMC5118547

Abstract Article PDF–1.0M

Select item 50311345.

Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics

Jasper J. Koehorst, Edoardo Saccenti, Peter J. Schaap, Vitor A. P. Martins dos Santos, Maria Suarez-Diez

Version 3. F1000Res. 2016; 5: 1987. Published online 2017 Jun 27. doi: 10.12688/f1000research.9416.3

PMCID:: PMC5031134

Abstract Article PDF–5.2M

Select item 39999256.

A pangenomic analysis of the Nannochloropsis organellar genomes reveals novel genetic variations in key metabolic genes

Shawn R Starkenburg, Kyungyoon J Kwon, Ramesh K Jha, Cedar McKay, Michael Jacobs, Olga Chertkov, Scott Twary, Gabrielle Rocap, Rose Ann Cattolico

BMC Genomics. 2014; 15: 212. Published online 2014 Mar 19. doi: 10.1186/1471-2164-15-212

PMCID:: PMC3999925

Abstract Article PDF–2.9M

Select item 39276077.

Annotation of Protein Domains Reveals Remarkable Conservation in the Functional Make up of Proteomes Across Superkingdoms

Arshan Nasir, Aisha Naeem, Muhammad Jawad Khan, Horacio D. Lopez-Nicora, Gustavo Caetano-Anollés

Genes (Basel) 2011 Dec; 2(4): 869–911. Published online 2011 Nov 8. doi: 10.3390/genes2040869

PMCID:: PMC3927607

Abstract Article PDF–2.0M

Select item 38717898.

Reconciliation and local gene tree rearrangement can be of mutual profit

Thi Hau Nguyen, Vincent Ranwez, Stéphanie Pointet, Anne-Muriel Arigon Chifolleau, Jean-Philippe Doyon, Vincent Berry

Algorithms Mol Biol. 2013; 8: 12. Published online 2013 Apr 8. doi: 10.1186/1748-7188-8-12

PMCID:: PMC3871789

Abstract Article PDF–3.2M

Select item 38471449.

Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme

Lorenzo Carretero-Paulet, Agnieszka Lipska, Jordi Pérez-Gil, Félix J Sangari, Victor A Albert, Manuel Rodríguez-Concepción

BMC Evol Biol. 2013; 13: 180. Published online 2013 Sep 3. doi: 10.1186/1471-2148-13-180

PMCID:: PMC3847144

Abstract Article PDF–1.9M

Select item 383670410.

Systematic Analysis of Compositional Order of Proteins Reveals New Characteristics of Biological Functions and a Universal Correlate of Macroevolution

Erez Persi, David Horn

PLoS Comput Biol. 2013 Nov; 9(11): e1003346. Published online 2013 Nov 21. doi: 10.1371/journal.pcbi.1003346

PMCID:: PMC3836704

Abstract Article PDF–2.3M

Select item 382451911.

Gloeobacter Rhodopsin, Limitation of Proton Pumping at High Electrochemical Load

Arend Vogt, Jonas Wietek, Peter Hegemann

Biophys J. 2013 Nov 5; 105(9): 2055–2063. doi: 10.1016/j.bpj.2013.08.031

PMCID:: PMC3824519

Abstract Article PDF–4.2M

Select item 339083512.

Lycopene cyclase paralog CruP protects against reactive oxygen species in oxygenic photosynthetic organisms

Louis M. T. Bradbury, Maria Shumskaya, Oren Tzfadia, Shi-Biao Wu, Edward J. Kennelly, Eleanore T. Wurtzel

Proc Natl Acad Sci U S A. 2012 Jul 3; 109(27): E1888–E1897. Published online 2012 Jun 15. doi: 10.1073/pnas.1206002109

PMCID:: PMC3390835

Abstract Article PDF–1.1M

Select item 329666013.

Mathematical modeling and comparison of protein size distribution in different plant, animal, fungal and microbial species reveals a negative correlation between protein size and protein number, thus providing insight into the evolution of proteomes

Axel Tiessen, Paulino Pérez-Rodríguez, Luis José Delaye-Arredondo

BMC Res Notes. 2012; 5: 85. Published online 2012 Feb 1. doi: 10.1186/1756-0500-5-85

PMCID:: PMC3296660

Abstract Article PDF–820K

Select item 315387614.

Calpain chronicle—an enzyme family under multidisciplinary characterization

Hiroyuki SORIMACHI, Shoji HATA, Yasuko ONO

Proc Jpn Acad Ser B Phys Biol Sci. 2011 Jun 10; 87(6): 287–327. doi: 10.2183/pjab.87.287

PMCID:: PMC3153876

Abstract Article PDF–4.7M

Select item 307391215.

Molecular evolution of urea amidolyase and urea carboxylase in fungi

Pooja K Strope, Kenneth W Nickerson, Steven D Harris, Etsuko N Moriyama

BMC Evol Biol. 2011; 11: 80. Published online 2011 Mar 29. doi: 10.1186/1471-2148-11-80

PMCID:: PMC3073912

Abstract Article PDF–549K

Select item 296312316.

Functional Promiscuity of Homologues of the Bacterial ArsA ATPases

Rostislav Castillo, Milton H. Saier, Jr.

Int J Microbiol. 2010; 2010: 187373. Published online 2010 Oct 20. doi: 10.1155/2010/187373

PMCID:: PMC2963123

Abstract Article PDF–1.5M

Select item 282373317.

Signature proteins for the major clades of Cyanobacteria

Radhey S Gupta, Divya W Mathews

BMC Evol Biol. 2010; 10: 24. Published online 2010 Jan 25. doi: 10.1186/1471-2148-10-24

PMCID:: PMC2823733

Abstract Article PDF–4.1M

Select item 279540418.

Reconstitution of Gloeobacter violaceus Rhodopsin with a Light-Harvesting Carotenoid Antenna

Eleonora S. Imasheva, Sergei P. Balashov, Ah Reum Choi, Kwang-Hwan Jung, Janos K. Lanyi

Biochemistry. Author manuscript; available in PMC 2009 Dec 17.

Published in final edited form as: Biochemistry. 2009 Nov 24; 48(46): 10948–10955. doi: 10.1021/bi901552x

PMCID:: PMC2795404

Abstract Article PDF–2.2M

Select item 268579719.

Bacterial feeding induces changes in immune-related gene expression and has trans-generational impacts in the cabbage looper (Trichoplusia ni)

Dalial Freitak, David G Heckel, Heiko Vogel

Front Zool. 2009; 6: 7. Published online 2009 May 7. doi: 10.1186/1742-9994-6-7

PMCID:: PMC2685797

Abstract Article PDF–738K

Select item 261419620.

Minimum Contradiction Matrices in Whole Genome Phylogenies

Marc Thuillard

Evol Bioinform Online. 2008; 4: 237–247. Published online 2008 Jul 21. doi: 10.4137/ebo.s909

PMCID:: PMC2614196

Abstract Article PDF–498K

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