PMC Links for Taxonomy (Select 240206) - PMC

Carson Holt, Michael Campbell, David A. Keays, Nathaniel Edelman, Aurélie Kapusta, Emily Maclary, Eric T. Domyan, Alexander Suh, Wesley C. Warren, Mark Yandell, M. Thomas P. Gilbert, Michael D. Shapiro

G3 (Bethesda) 2018 May; 8(5): 1391–1398. Published online 2018 Mar 8. doi: 10.1534/g3.117.300443

PMCID:: PMC5940132

Abstract Article PDF–1.2M

Select item 58372906.

The Genome 10K Project: A Way Forward

Klaus-Peter Koepfli, Benedict Paten, the Genome 10K Community of Scientists, Stephen J. O’Brien

Annu Rev Anim Biosci. Author manuscript; available in PMC 2018 Mar 5.

Published in final edited form as: Annu Rev Anim Biosci. 2015; 3: 57–111. doi: 10.1146/annurev-animal-090414-014900

PMCID:: PMC5837290

Abstract Article PDF–883K

Select item 58121137.

Evolution of CYP2J19, a gene involved in colour vision and red coloration in birds: positive selection in the face of conservation and pleiotropy

Hanlu Twyman, Staffan Andersson, Nicholas I. Mundy

BMC Evol Biol. 2018; 18: 22. Published online 2018 Feb 13. doi: 10.1186/s12862-018-1136-y

PMCID:: PMC5812113

Abstract Article PDF–428K

Select item 50807188.

Complete mitochondrial genomes of living and extinct pigeons revise the timing of the columbiform radiation

André E. R. Soares, Ben J. Novak, James Haile, Tim H. Heupink, Jon Fjeldså, M. Thomas P. Gilbert, Hendrik Poinar, George M. Church, Beth Shapiro

BMC Evol Biol. 2016; 16: 230. Published online 2016 Oct 26. doi: 10.1186/s12862-016-0800-3

PMCID:: PMC5080718

Abstract Article PDF–871K

Select item 50350129.

The Wide Distribution and Change of Target Specificity of R2 Non-LTR Retrotransposons in Animals

Kenji K. Kojima, Yosuke Seto, Haruhiko Fujiwara

PLoS One. 2016; 11(9): e0163496. Published online 2016 Sep 23. doi: 10.1371/journal.pone.0163496

PMCID:: PMC5035012

Abstract Article PDF–3.2M

Select item 500661610.

A new look at the LTR retrotransposon content of the chicken genome

Andrew S. Mason, Janet E. Fulton, Paul M. Hocking, David W. Burt

BMC Genomics. 2016; 17(1): 688. Published online 2016 Aug 30. doi: 10.1186/s12864-016-3043-1

PMCID:: PMC5006616

Abstract Article PDF–1.1M

Select item 483056311.

MOXD2, a Gene Possibly Associated with Olfaction, Is Frequently Inactivated in Birds

Chul Jun Goh, Dongjin Choi, Dong-Bin Park, Hyein Kim, Yoonsoo Hahn

PLoS One. 2016; 11(4): e0152431. Published online 2016 Apr 13. doi: 10.1371/journal.pone.0152431

PMCID:: PMC4830563

Abstract Article PDF–2.8M

Select item 467349512.

Gekko japonicus genome reveals evolution of adhesive toe pads and tail regeneration

Yan Liu, Qian Zhou, Yongjun Wang, Longhai Luo, Jian Yang, Linfeng Yang, Mei Liu, Yingrui Li, Tianmei Qian, Yuan Zheng, Meiyuan Li, Jiang Li, Yun Gu, Zujing Han, Man Xu, Yingjie Wang, Changlai Zhu, Bin Yu, Yumin Yang, Fei Ding, Jianping Jiang, Huanming Yang, Xiaosong Gu

Nat Commun. 2015; 6: 10033. Published online 2015 Nov 24. doi: 10.1038/ncomms10033

PMCID:: PMC4673495

Abstract Article PDF–2.4M

Select item 459523713.

Gene loss, adaptive evolution and the co-evolution of plumage coloration genes with opsins in birds

Rui Borges, Imran Khan, Warren E. Johnson, M. Thomas P. Gilbert, Guojie Zhang, Erich D. Jarvis, Stephen J. O’Brien, Agostinho Antunes

BMC Genomics. 2015; 16: 751. Published online 2015 Oct 6. doi: 10.1186/s12864-015-1924-3

PMCID:: PMC4595237

Abstract Article PDF–1.2M

Select item 457106314.

Evolution of the avian β-defensin and cathelicidin genes

Yuanyuan Cheng, Michael Dennis Prickett, Weronika Gutowska, Richard Kuo, Katherine Belov, David W. Burt

BMC Evol Biol. 2015; 15: 188. Published online 2015 Sep 15. doi: 10.1186/s12862-015-0465-3

PMCID:: PMC4571063

Abstract Article PDF–2.2M

Select item 434922215.

Phylogenomic analyses data of the avian phylogenomics project

Erich D Jarvis, Siavash Mirarab, Andre J Aberer, Bo Li, Peter Houde, Cai Li, Simon Y W Ho, Brant C Faircloth, Benoit Nabholz, Jason T Howard, Alexander Suh, Claudia C Weber, Rute R da Fonseca, Alonzo Alfaro-Núñez, Nitish Narula, Liang Liu, Dave Burt, Hans Ellegren, Scott V Edwards, Alexandros Stamatakis, David P Mindell, Joel Cracraft, Edward L Braun, Tandy Warnow, Wang Jun, M Thomas Pius Gilbert, Guojie Zhang, The Avian Phylogenomics Consortium

Gigascience. 2015; 4: 4. Published online 2015 Feb 12. doi: 10.1186/s13742-014-0038-1