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Items: 1 to 20 of 64

1.
Assembly of hundreds of novel bacterial genomes from the chicken caecum
Laura Glendinning, Robert D. Stewart, Mark J. Pallen, Kellie A. Watson, Mick Watson
Genome Biol. 2020; 21: 34. Published online 2020 Feb 12. doi: 10.1186/s13059-020-1947-1
Correction in:
Genome Biol. 2021; 22: 60.
PMCID:
PMC7014784
AbstractArticlePDF–3.8M
2.
Tracing the Origin and Evolution of Pseudokinases Across the Tree of Life
Annie Kwon, Steven Scott, Rahil Taujale, Wayland Yeung, Krys J. Kochut, Patrick A. Eyers, Natarajan Kannan
Sci Signal. Author manuscript; available in PMC 2020 Feb 4.
Published in final edited form as: Sci Signal. 2019 Apr 23; 12(578): eaav3810. Published online 2019 Apr 23. doi: 10.1126/scisignal.aav3810
PMCID:
PMC6997932
AbstractArticlePDF–2.7M
3.
Metagenomic Characterization of Intestinal Regions in Pigs With Contrasting Feed Efficiency
Jianping Quan, Zhenfang Wu, Yong Ye, Longlong Peng, Jie Wu, Donglin Ruan, Yibin Qiu, Rongrong Ding, Xingwang Wang, Enqin Zheng, Gengyuan Cai, Wen Huang, Jie Yang
Front Microbiol. 2020; 11: 32. Published online 2020 Jan 23. doi: 10.3389/fmicb.2020.00032
PMCID:
PMC6989599
AbstractArticlePDF–4.0M
4.
The influence of temperature and pH on bacterial community composition of microbial mats in hot springs from Costa Rica
Lorena Uribe‐Lorío, Laura Brenes-Guillén, Walter Hernández‐Ascencio, Raúl Mora‐Amador, Gino González, Carlos J. Ramírez‐Umaña, Beatriz Díez, Carlos Pedrós‐Alió
Microbiologyopen. 2019 Oct; 8(10): e893. Published online 2019 Jul 4. doi: 10.1002/mbo3.893
PMCID:
PMC6813449
AbstractArticlePDF–2.4M
5.
The Clinical Link between Human Intestinal Microbiota and Systemic Cancer Therapy
Romy Aarnoutse, Janine Ziemons, John Penders, Sander S. Rensen, Judith de Vos-Geelen, Marjolein L. Smidt
Int J Mol Sci. 2019 Sep; 20(17): 4145. Published online 2019 Aug 25. doi: 10.3390/ijms20174145
PMCID:
PMC6747354
AbstractArticlePDF–951K
6.
Diversity of Bacteria Exhibiting Bile Acid-inducible 7α-dehydroxylation Genes in the Human Gut
Marius Vital, Tatjana Rud, Silke Rath, Dietmar H. Pieper, Dirk Schlüter
Comput Struct Biotechnol J. 2019; 17: 1016–1019. Published online 2019 Jul 26. doi: 10.1016/j.csbj.2019.07.012
PMCID:
PMC6692061
AbstractArticlePDF–299K
7.
Rearing pattern alters porcine myofiber type, fat deposition, associated microbial communities and functional capacity
Keke Qi, Xiaoming Men, Jie Wu, Ziwei Xu
BMC Microbiol. 2019; 19: 181. Published online 2019 Aug 6. doi: 10.1186/s12866-019-1556-x
PMCID:
PMC6683424
AbstractArticlePDF–2.5M
8.
Disordered gut microbiota and alterations in metabolic patterns are associated with atrial fibrillation
Kun Zuo, Jing Li, Kuibao Li, Chaowei Hu, Yuanfeng Gao, Mulei Chen, Roumu Hu, Ye Liu, Hongjie Chi, Hongjiang Wang, Yanwen Qin, Xiaoyan Liu, Shichao Li, Jun Cai, Jiuchang Zhong, Xinchun Yang
Gigascience. 2019 Jun; 8(6): giz058. Published online 2019 May 30. doi: 10.1093/gigascience/giz058
PMCID:
PMC6543127
AbstractArticlePDF–4.1M
9.
Broad phylogeny and functionality of cellulosomal components in the bovine rumen microbiome
Lizi Bensoussan, Sarah Moraïs, Bareket Dassa, Nir Friedman, Bernard Henrissat, Vincent Lombard, Edward A. Bayer, Itzhak Mizrahi
Environ Microbiol. 2017 Jan; 19(1): 185–197. Published online 2016 Oct 28. doi: 10.1111/1462-2920.13561
PMCID:
PMC6487960
AbstractArticlePDF–584K
10.
Metadata Analysis Approaches for Understanding and Improving the Functional Involvement of Rumen Microbial Consortium in Digestion and Metabolism of Plant Biomass
Ayyappa Kumar Sista Kameshwar, Luiz Pereira Ramos, Wensheng Qin
J Genomics. 2019; 7: 31–45. Published online 2019 Apr 2. doi: 10.7150/jgen.32164
PMCID:
PMC6470328
AbstractArticlePDF–1.9M
11.
GABA Modulating Bacteria of the Human Gut Microbiota
Philip Strandwitz, Ki Hyun Kim, Darya Terekhova, Joanne K. Liu, Anukriti Sharma, Jennifer Levering, Daniel McDonald, David Dietrich, Timothy R. Ramadhar, Asama Lekbua, Nader Mroue, Conor Liston, Eric J. Stewart, Marc J. Dubin, Karsten Zengler, Rob Knight, Jack A. Gilbert, Jon Clardy, Kim Lewis
Nat Microbiol. Author manuscript; available in PMC 2019 Jun 10.
Published in final edited form as: Nat Microbiol. 2019 Mar; 4(3): 396–403. Published online 2018 Dec 10. doi: 10.1038/s41564-018-0307-3
PMCID:
PMC6384127
ArticlePDF–1.0M
12.
Tackling the Challenges of FASTQ Referential Compression
Aníbal Guerra, Jaime Lotero, José Édinson Aedo, Sebastián Isaza
Bioinform Biol Insights. 2019; 13: 1177932218821373. Published online 2019 Feb 14. doi: 10.1177/1177932218821373
Correction in:
Bioinform Biol Insights. 2019; 13: 1177932219876803.
PMCID:
PMC6376532
AbstractArticlePDF–2.0M
13.
Potential of Omega-3 Polyunsaturated Fatty Acids in Managing Chemotherapy- or Radiotherapy-Related Intestinal Microbial Dysbiosis
Yue Zhang, Boyan Zhang, Lihua Dong, Pengyu Chang
Adv Nutr. 2019 Jan; 10(1): 133–147. Published online 2018 Dec 19. doi: 10.1093/advances/nmy076
PMCID:
PMC6370266
AbstractArticlePDF–2.1M
14.
Exploring the Fecal Microbial Composition and Metagenomic Functional Capacities Associated With Feed Efficiency in Commercial DLY Pigs
Jianping Quan, Gengyuan Cai, Ming Yang, Zhonghua Zeng, Rongrong Ding, Xingwang Wang, Zhanwei Zhuang, Shenping Zhou, Shaoyun Li, Huaqiang Yang, Zicong Li, Enqin Zheng, Wen Huang, Jie Yang, Zhenfang Wu
Front Microbiol. 2019; 10: 52. Published online 2019 Jan 29. doi: 10.3389/fmicb.2019.00052
PMCID:
PMC6361760
AbstractArticlePDF–2.9M
15.
Application of the uridine auxotrophic host and synthetic nucleosides for a rapid selection of hydrolases from metagenomic libraries
Nina Urbelienė, Simonas Kutanovas, Rita Meškienė, Renata Gasparavičiūtė, Daiva Tauraitė, Martyna Koplūnaitė, Rolandas Meškys
Microb Biotechnol. 2019 Jan; 12(1): 148–160. Published online 2018 Oct 9. doi: 10.1111/1751-7915.13316
PMCID:
PMC6302743
AbstractArticlePDF–792K
16.
Tree Nut Consumption and Adipose Tissue Mass: Mechanisms of Action
Alyssa M Tindall, Kristina S Petersen, Regina Lamendella, Gregory C Shearer, Laura E Murray-Kolb, David N Proctor, Penny M Kris-Etherton
Curr Dev Nutr. 2018 Nov; 2(11): nzy069. Published online 2018 Aug 3. doi: 10.1093/cdn/nzy069
PMCID:
PMC6252345
AbstractArticlePDF–364K
17.
Visualization-assisted binning of metagenome assemblies reveals potential new pathogenic profiles in idiopathic travelers’ diarrhea
Qiyun Zhu, Christopher L. Dupont, Marcus B. Jones, Kevin M. Pham, Zhi-Dong Jiang, Herbert L. DuPont, Sarah K. Highlander
Microbiome. 2018; 6: 201. Published online 2018 Nov 8. doi: 10.1186/s40168-018-0579-0
PMCID:
PMC6225641
AbstractArticlePDF–8.8M
18.
Pathogenic functions of host microbiota
Silke Rath, Tatjana Rud, André Karch, Dietmar Helmut Pieper, Marius Vital
Microbiome. 2018; 6: 174. Published online 2018 Sep 28. doi: 10.1186/s40168-018-0542-0
PMCID:
PMC6162913
AbstractArticlePDF–1.6M
19.
Molecular Alteration Analysis of Human Gut Microbial Composition in Graves' disease Patients
Hafiz Muhammad Ishaq, Imran Shair Mohammad, Muhammad Shahzad, Chaofeng Ma, Muhammad Asif Raza, Xiaokang Wu, Hui Guo, Peijie Shi, Jiru Xu
Int J Biol Sci. 2018; 14(11): 1558–1570. Published online 2018 Sep 7. doi: 10.7150/ijbs.24151
PMCID:
PMC6158725
AbstractArticlePDF–1.1M
20.
Novel link between gut-microbiome derived metabolite and shared gene-effects with hepatic steatosis and fibrosis in NAFLD
Cyrielle Caussy, Cynthia Hsu, Min-Tzu Lo, Amy Liu, Ricki Bettencourt, Veeral H. Ajmera, Shirin Bassirian, Jonathan Hooker, Ethan Sy, Lisa Richards, Nicholas Schork, Bernd Schnabl, David A. Brenner, Claude B. Sirlin, Chi-Hua Chen, Rohit Loomba, for the Genetics of NAFLD in Twins Consortium
Hepatology. Author manuscript; available in PMC 2019 Sep 23.
Published in final edited form as: Hepatology. 2018 Sep; 68(3): 918–932. Published online 2018 May 20. doi: 10.1002/hep.29892
PMCID:
PMC6151296
AbstractArticlePDF–2.0M

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