PMC Articles for PubChem Compound (Select 10986305) - PMC

Sylvain Delaunay, Gloria Pascual, Bohai Feng, Kevin Klann, Mikaela Behm, Agnes Hotz-Wagenblatt, Karsten Richter, Karim Zaoui, Esther Herpel, Christian Münch, Sabine Dietmann, Jochen Hess, Salvador Aznar Benitah, Michaela Frye

Nature. 2022; 607(7919): 593–603. Published online 2022 Jun 29. doi: 10.1038/s41586-022-04898-5

PMCID:: PMC9300468

Abstract Article PDF–19M

Select item 88424975.

bZIP Dimers CREB1, ATF2, Zta, ATF3|cJun, and cFos|cJun Prefer to Bind to Some Double-Stranded DNA Sequences Containing 5-Formylcytosine and 5-Carboxylcytosine

Sreejana Ray, Desiree Tillo, Aniekanabasi Ufot, Nima Assad, Stewart Durell, Charles Vinson

Biochemistry. Author manuscript; available in PMC 2022 Feb 14.

Published in final edited form as: Biochemistry. 2020 Sep 29; 59(38): 3529–3540. Published online 2020 Sep 20. doi: 10.1021/acs.biochem.0c00475

PMCID:: PMC8842497

Abstract Article PDF–2.7M

Select item 85869106.

Translesion synthesis past 5-formylcytosine mediated DNA-peptide crosslinks by hPolη is dependent on the local DNA sequence

Jenna Thomforde, Iwen Fu, Freddys Rodriguez, Suresh S. Pujari, Suse Broyde, Natalia Tretyakova

Biochemistry. Author manuscript; available in PMC 2022 Jun 15.

Published in final edited form as: Biochemistry. 2021 Jun 15; 60(23): 1797–1807. Published online 2021 Jun 3. doi: 10.1021/acs.biochem.1c00130

PMCID:: PMC8586910

Abstract Article PDF–1.8M

Select item 85393517.

Direct and Base Excision Repair-Mediated Regulation of a GC-Rich cis-Element in Response to 5-Formylcytosine and 5-Carboxycytosine

Nadine Müller, Eveliina Ponkkonen, Thomas Carell, Andriy Khobta

Int J Mol Sci. 2021 Oct; 22(20): 11025. Published online 2021 Oct 13. doi: 10.3390/ijms222011025

PMCID:: PMC8539351

Abstract Article PDF–2.4M

Select item 84989178.

Proteome‐Wide Profiling of Readers for DNA Modification

Lin Bai, Guojian Yang, Zhaoyu Qin, Jiacheng Lyu, Yunzhi Wang, Jinwen Feng, Mingwei Liu, Tongqing Gong, Xianju Li, Zhengyang Li, Jixi Li, Jun Qin, Wenjun Yang, Chen Ding

Adv Sci (Weinh) 2021 Oct; 8(19): 2101426. Published online 2021 Aug 5. doi: 10.1002/advs.202101426

PMCID:: PMC8498917

Abstract Article PDF–4.0M

Select item 82652079.

Distinguishing Active Versus Passive DNA Demethylation Using Illumina MethylationEPIC BeadChip Microarrays

Rochelle L. Tiedemann, Hope E. Eden, Zhijun Huang, Keith D. Robertson, Scott B. Rothbart

Methods Mol Biol. Author manuscript; available in PMC 2021 Jul 8.

Published in final edited form as: Methods Mol Biol. 2021; 2272: 97–140. doi: 10.1007/978-1-0716-1294-1_7

Correction in:: Methods Mol Biol. 2021; 2272: C1.

PMCID:: PMC8265207

Abstract Article PDF–1.7M

Select item 821841510.

Roles of TET and TDG in DNA demethylation in proliferating and non-proliferating immune cells

Atsushi Onodera, Edahí González-Avalos, Chan-Wang Jerry Lio, Romain O. Georges, Alfonso Bellacosa, Toshinori Nakayama, Anjana Rao

Genome Biol. 2021; 22: 186. Published online 2021 Jun 22. doi: 10.1186/s13059-021-02384-1

PMCID:: PMC8218415

Abstract Article PDF–3.4M

Select item 800546611.

TET-TDG active DNA demethylation at CpG and non-CpG sites

Jamie E. DeNizio, Blaine J. Dow, Juan C. Serrano, Uday Ghanty, Alexander C. Drohat, Rahul M. Kohli

J Mol Biol. Author manuscript; available in PMC 2022 Apr 16.

Published in final edited form as: J Mol Biol. 2021 Apr 16; 433(8): 166877. Published online 2021 Feb 7. doi: 10.1016/j.jmb.2021.166877

PMCID:: PMC8005466

Abstract Article PDF–1.4M

Select item 785763912.

C/EBPβ (CEBPB) protein binding to the C/EBP|CRE DNA 8-mer TTGC|GTCA is inhibited by 5hmC and enhanced by 5mC, 5fC, and 5caC in the CG dinucleotide.

Syed Khund Sayeed, Jianfei Zhao, Bangalore K. Sathyanarayana, Jaya Prakash Golla, Charles Vinson

Biochim Biophys Acta. Author manuscript; available in PMC 2021 Feb 3.

Published in final edited form as: Biochim Biophys Acta. 2015 Jun; 1849(6): 583–589. Published online 2015 Mar 13. doi: 10.1016/j.bbagrm.2015.03.002

PMCID:: PMC7857639

Abstract Article PDF–1.2M

Select item 747096513.

Impact of 5-formylcytosine on the melting kinetics of DNA by ¹H NMR chemical exchange

Romeo C A Dubini, Alexander Schön, Markus Müller, Thomas Carell, Petra Rovó

Nucleic Acids Res. 2020 Sep 4; 48(15): 8796–8807. Published online 2020 Jul 11. doi: 10.1093/nar/gkaa589

PMCID:: PMC7470965

Abstract Article PDF–1.7M

Select item 741901314.

5-Formylcytosine landscapes of human preimplantation embryos at single-cell resolution

Yun Gao, Lin Li, Peng Yuan, Fan Zhai, Yixin Ren, Liying Yan, Rong Li, Ying Lian, Xiaohui Zhu, Xinglong Wu, Kehkooi Kee, Lu Wen, Jie Qiao, Fuchou Tang

PLoS Biol. 2020 Jul; 18(7): e3000799. Published online 2020 Jul 30. doi: 10.1371/journal.pbio.3000799

PMCID:: PMC7419013

Abstract Article PDF–4.3M

Select item 719346315.

5-formylcytosine and 5-hydroxymethyluracil as surrogate markers of TET2 and SF3B1 mutations in myelodysplastic syndrome, respectively

Daniel Gackowski, Maciej Gawronski, Cassandra Kerr, Tomas Radivoyevitch, Ewelina Zarakowska, Marta Starczak, Abdulkadir Abakir, Alexey Ruzov, Jaroslaw P. Maciejewski, Ryszard Olinski

Haematologica. 2020 May; 105(5): e213–e215. doi: 10.3324/haematol.2019.224030

PMCID:: PMC7193463

Article PDF–904K

Select item 694313816.

Epigenetic modification of cytosines fine tunes the stability of i-motif DNA

Elisé P Wright, Mahmoud A S Abdelhamid, Michelle O Ehiabor, Melanie C Grigg, Kelly Irving, Nicole M Smith, Zoë A E Waller

Nucleic Acids Res. 2020 Jan 10; 48(1): 55–62. Published online 2019 Nov 28. doi: 10.1093/nar/gkz1082

PMCID:: PMC6943138

Abstract Article PDF–1.1M

Select item 691778917.

Mass spectrometry reveals the presence of specific set of epigenetic DNA modifications in the Norway spruce genome

Igor A. Yakovlev, Daniel Gackowski, Abdulkadir Abakir, Marcos Viejo, Alexey Ruzov, Ryszard Olinski, Marta Starczak, Carl Gunnar Fossdal, Konstantin V. Krutovsky

Sci Rep. 2019; 9: 19314. Published online 2019 Dec 17. doi: 10.1038/s41598-019-55826-z

PMCID:: PMC6917789

Abstract Article PDF–1.1M

Select item 688564418.

5-Formylcytosine-induced DNA–peptide cross-links reduce transcription efficiency, but do not cause transcription errors in human cells

Shaofei Ji, Daeyoon Park, Konstantin Kropachev, Marina Kolbanovskiy, Iwen Fu, Suse Broyde, Maram Essawy, Nicholas E. Geacintov, Natalia Y. Tretyakova

J Biol Chem. 2019 Nov 29; 294(48): 18387–18397. Published online 2019 Oct 9. doi: 10.1074/jbc.RA119.009834

PMCID:: PMC6885644

Abstract Article PDF–2.6M

Select item 682130319.

Polymerization retardation isothermal amplification (PRIA): a strategy enables sensitively quantify genome-wide 5-methylcytosine oxides rapidly on handy instruments with nanoscale sample input

Danping Chen, Yang Wang, Mingming Mo, Junjie Zhang, Yanfei Zhang, Yuzhi Xu, Si-Yang Liu, Jun Chen, Yingjun Ma, Li Zhang, Zong Dai, Chun Cai, Xiaoyong Zou

Nucleic Acids Res. 2019 Nov 4; 47(19): e119. Published online 2019 Aug 16. doi: 10.1093/nar/gkz704

PMCID:: PMC6821303

Abstract Article PDF–3.7M

Select item 666897220.

Role of ten‐eleven translocation proteins and 5‐hydroxymethylcytosine in hepatocellular carcinoma

Penghui Wang, Yunmeng Yan, Wei Yu, Hongyi Zhang

Cell Prolif. 2019 Jul; 52(4): e12626. Published online 2019 Apr 29. doi: 10.1111/cpr.12626

PMCID:: PMC6668972

Abstract Article PDF–647K

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PMC Articles for PubChem Compound (Select 10986305) (93)
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Lagotis stolonifera voucher US2315507 (US) internal transcribed spacer 1, partia...
Lagotis stolonifera voucher US2315507 (US) internal transcribed spacer 1, partial sequence; 5.8S ribosomal RNA gene and internal transcribed spacer 2, complete sequence; and 26S ribosomal RNA gene, partial sequence
gi|498542120|gb|KC413446.1|

Nucleotide
Chain A, APEBEC3F/ssDNA-T9
Chain A, APEBEC3F/ssDNA-T9
gi|1519485390|pdb|5ZVB|A

Protein

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