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Items: 1 to 20 of 116

1.
The Tempo and Mode of Angiosperm Mitochondrial Genome Divergence Inferred from Intraspecific Variation in Arabidopsis thaliana
Zhiqiang Wu, Gus Waneka, Daniel B. Sloan
G3 (Bethesda) 2020 Mar; 10(3): 1077–1086. Published online 2020 Jan 21. doi: 10.1534/g3.119.401023
PMCID:
PMC7056966
AbstractArticlePDF–1.5M
2.
The complete chloroplast genome of greater duckweed (Spirodela polyrhiza 7498) using PacBio long reads: insights into the chloroplast evolution and transcription regulation
Yating Zhang, Dong An, Changsheng Li, Zhixuan Zhao, Wenqin Wang
BMC Genomics. 2020; 21: 76. Published online 2020 Jan 28. doi: 10.1186/s12864-020-6499-y
PMCID:
PMC6986005
AbstractArticlePDF–1.9M
3.
Comparative analysis of cp genome of Fagonia indica growing in desert and its implications in pattern of similarity and variations
Mohamed Soliman Elshikh, Soo-Yong Kim, Mohammad Ajmal Ali, Fahad Al-Hemaid, Shen-Ming Chen, Sangho Choi, Mohammad Oliur Rahman, Meena Elangbam, Joongku Lee
Saudi J Biol Sci. 2020 Jan; 27(1): 229–232. Published online 2019 Aug 31. doi: 10.1016/j.sjbs.2019.08.016
PMCID:
PMC6933238
AbstractArticlePDF–1.6M
4.
Unique Shine–Dalgarno Sequences in Cyanobacteria and Chloroplasts Reveal Evolutionary Differences in Their Translation Initiation
Yulong Wei, Xuhua Xia
Genome Biol Evol. 2019 Nov; 11(11): 3194–3206. Published online 2019 Oct 22. doi: 10.1093/gbe/evz227
PMCID:
PMC6847405
AbstractArticlePDF–1.0M
5.
PCIR: a database of Plant Chloroplast Inverted Repeats
Rui Zhang, Fangfang Ge, Huayang Li, Yudong Chen, Ying Zhao, Ying Gao, Zhiguo Liu, Long Yang
Database (Oxford) 2019; 2019: baz127. Published online 2019 Nov 7. doi: 10.1093/database/baz127
PMCID:
PMC6835207
AbstractArticlePDF–97M
6.
Ribonucleoprotein Capture by in Vivo Expression of a Designer Pentatricopeptide Repeat Protein in Arabidopsis
James J. McDermott, Kenneth P. Watkins, Rosalind Williams-Carrier, Alice Barkan
Plant Cell. 2019 Aug; 31(8): 1723–1733. Published online 2019 May 23. doi: 10.1105/tpc.19.00177
PMCID:
PMC6713294
AbstractArticlePDF–2.0M
7.
Analyzing and Characterizing the Chloroplast Genome of Salix wilsonii
Yingnan Chen, Nan Hu, Huaitong Wu
Biomed Res Int. 2019; 2019: 5190425. Published online 2019 Jul 15. doi: 10.1155/2019/5190425
PMCID:
PMC6662467
AbstractArticlePDF–1.4M
8.
Extensive chloroplast genome rearrangement amongst three closely related Halamphora spp. (Bacillariophyceae), and evidence for rapid evolution as compared to land plants
Sarah E. Hamsher, Kyle G. Keepers, Cloe S. Pogoda, Joshua G. Stepanek, Nolan C. Kane, J. Patrick Kociolek
PLoS One. 2019; 14(7): e0217824. Published online 2019 Jul 3. doi: 10.1371/journal.pone.0217824
PMCID:
PMC6608930
AbstractArticlePDF–2.0M
9.
CPGAVAS2, an integrated plastome sequence annotator and analyzer
Linchun Shi, Haimei Chen, Mei Jiang, Liqiang Wang, Xi Wu, Linfang Huang, Chang Liu
Nucleic Acids Res. 2019 Jul 2; 47(W1): W65–W73. Published online 2019 May 8. doi: 10.1093/nar/gkz345
PMCID:
PMC6602467
AbstractArticlePDF–3.4M
10.
De novo whole-genome assembly in Chrysanthemum seticuspe, a model species of Chrysanthemums, and its application to genetic and gene discovery analysis
Hideki Hirakawa, Katsuhiko Sumitomo, Tamotsu Hisamatsu, Soichiro Nagano, Kenta Shirasawa, Yohei Higuchi, Makoto Kusaba, Masaji Koshioka, Yoshihiro Nakano, Masafumi Yagi, Hiroyasu Yamaguchi, Kenji Taniguchi, Michiharu Nakano, Sachiko N Isobe
DNA Res. 2019 Jun; 26(3): 195–203. Published online 2019 Jan 27. doi: 10.1093/dnares/dsy048
PMCID:
PMC6589549
AbstractArticlePDF–1.6M
11.
Tracing the Evolution of the Plastome and Mitogenome in the Chloropicophyceae Uncovered Convergent tRNA Gene Losses and a Variant Plastid Genetic Code
Monique Turmel, Adriana Lopes dos Santos, Christian Otis, Roxanne Sergerie, Claude Lemieux
Genome Biol Evol. 2019 Apr; 11(4): 1275–1292. Published online 2019 Apr 1. doi: 10.1093/gbe/evz074
PMCID:
PMC6486808
AbstractArticlePDF–2.9M
12.
PPR Protein BFA2 Is Essential for the Accumulation of the atpH/F Transcript in Chloroplasts
Lin Zhang, Wen Zhou, Liping Che, Jean-David Rochaix, Congming Lu, Wenjing Li, Lianwei Peng
Front Plant Sci. 2019; 10: 446. Published online 2019 Apr 12. doi: 10.3389/fpls.2019.00446
PMCID:
PMC6474325
AbstractArticlePDF–6.4M
13.
High-efficiency generation of fertile transplastomic Arabidopsis plants
Stephanie Ruf, Joachim Forner, Claudia Hasse, Xenia Kroop, Stefanie Seeger, Laura Schollbach, Anne Schadach, Ralph Bock
Nat Plants. Author manuscript; available in PMC 2019 Aug 18.
Published in final edited form as: Nat Plants. 2019 Mar; 5(3): 282–289. Published online 2019 Feb 18. doi: 10.1038/s41477-019-0359-2
PMCID:
PMC6420123
AbstractArticlePDF–1.5M
14.
GRIBCG: a software for selection of sgRNAs in the design of balancer chromosomes
Brian B. Merritt, Lily S. Cheung
BMC Bioinformatics. 2019; 20: 122. Published online 2019 Mar 12. doi: 10.1186/s12859-019-2712-x
PMCID:
PMC6416924
AbstractArticlePDF–1.4M
15.
A comparative evaluation of hybrid error correction methods for error-prone long reads
Shuhua Fu, Anqi Wang, Kin Fai Au
Genome Biol. 2019; 20: 26. Published online 2019 Feb 4. doi: 10.1186/s13059-018-1605-z
PMCID:
PMC6362602
AbstractArticlePDF–2.3M
16.
Mitochondrial and chloroplast genomes provide insights into the evolutionary origins of quinoa (Chenopodium quinoa Willd.)
Peter J. Maughan, Lindsay Chaney, Damien J. Lightfoot, Brian J. Cox, Mark Tester, Eric N. Jellen, David E. Jarvis
Sci Rep. 2019; 9: 185. Published online 2019 Jan 17. doi: 10.1038/s41598-018-36693-6
PMCID:
PMC6336861
AbstractArticlePDF–1.4M
17.
PUMPKIN, the Sole Plastid UMP Kinase, Associates with Group II Introns and Alters Their Metabolism
Lisa-Marie Schmid, Lisa Ohler, Torsten Möhlmann, Andreas Brachmann, Jose M. Muiño, Dario Leister, Jörg Meurer, Nikolay Manavski
Plant Physiol. 2019 Jan; 179(1): 248–264. Published online 2018 Nov 8. doi: 10.1104/pp.18.00687
PMCID:
PMC6324238
AbstractArticlePDF–1.8M
18.
Plant evolution in alkaline magnesium-rich soils: A phylogenetic study of the Mediterranean genus Hormathophylla (Cruciferae: Alysseae) based on nuclear and plastid sequences
Esteban Salmerón-Sánchez, Javier Fuertes-Aguilar, Stanislav Španiel, Francisco Javier Pérez-García, Encarna Merlo, Juan Antonio Garrido-Becerra, Juan Mota
PLoS One. 2018; 13(12): e0208307. Published online 2018 Dec 21. doi: 10.1371/journal.pone.0208307
PMCID:
PMC6303028
AbstractArticlePDF–3.1M
19.
Efficient Replication of the Plastid Genome Requires an Organellar Thymidine Kinase
Monique Le Ret, Susan Belcher, Stéfanie Graindorge, Clémentine Wallet, Sandrine Koechler, Mathieu Erhardt, Rosalind Williams-Carrier, Alice Barkan, José M. Gualberto
Plant Physiol. 2018 Dec; 178(4): 1643–1656. Published online 2018 Oct 10. doi: 10.1104/pp.18.00976
PMCID:
PMC6288739
AbstractArticlePDF–2.0M
20.
Comparative assessment shows the reliability of chloroplast genome assembly using RNA-seq
Carolina Osuna-Mascaró, Rafael Rubio de Casas, Francisco Perfectti
Sci Rep. 2018; 8: 17404. Published online 2018 Nov 27. doi: 10.1038/s41598-018-35654-3
PMCID:
PMC6258696
AbstractArticlePDF–3.1M

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