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Items: 1 to 20 of 59

1.
A New Chloroplast DNA Extraction Protocol Significantly Improves the Chloroplast Genome Sequence Quality of Foxtail Millet (Setaria italica (L.) P. Beauv.)
Dan Liu, Yanjiao Cui, Suying Li, Guihua Bai, Qiang Li, Zilong Zhao, Dan Liang, Conglei Wang, Jianhe Wang, Xiaowei Shi, Chao Chen, Gang Feng, Zhengli Liu
Sci Rep. 2019; 9: 16227. Published online 2019 Nov 7. doi: 10.1038/s41598-019-52786-2
PMCID:
PMC6838068
AbstractArticlePDF–3.4M
2.
Aethionema arabicum: a novel model plant to study the light control of seed germination
Zsuzsanna Mérai, Kai Graeber, Per Wilhelmsson, Kristian K Ullrich, Waheed Arshad, Christopher Grosche, Danuše Tarkowská, Veronika Turečková, Miroslav Strnad, Stefan A Rensing, Gerhard Leubner-Metzger, Ortrun Mittelsten Scheid
J Exp Bot. 2019 Jun 1; 70(12): 3313–3328. Published online 2019 Apr 5. doi: 10.1093/jxb/erz146
PMCID:
PMC6598081
AbstractArticlePDF–1.3M
3.
A chromosome-level sequence assembly reveals the structure of the Arabidopsis thaliana Nd-1 genome and its gene set
Boas Pucker, Daniela Holtgräwe, Kai Bernd Stadermann, Katharina Frey, Bruno Huettel, Richard Reinhardt, Bernd Weisshaar
PLoS One. 2019; 14(5): e0216233. Published online 2019 May 21. doi: 10.1371/journal.pone.0216233
PMCID:
PMC6529160
AbstractArticlePDF–1.1M
4.
Transcription is a major driving force for plastid genome instability in Arabidopsis
Juliana Andrea Pérez Di Giorgio, Étienne Lepage, Samuel Tremblay-Belzile, Sébastien Truche, Audrey Loubert-Hudon, Normand Brisson
PLoS One. 2019; 14(4): e0214552. Published online 2019 Apr 3. doi: 10.1371/journal.pone.0214552
PMCID:
PMC6447228
AbstractArticlePDF–2.8M
5.
Usability of reference-free transcriptome assemblies for detection of differential expression: a case study on Aethionema arabicum dimorphic seeds
Per K. I. Wilhelmsson, Jake O. Chandler, Noe Fernandez-Pozo, Kai Graeber, Kristian K. Ullrich, Waheed Arshad, Safina Khan, Johannes A. Hofberger, Karl Buchta, Patrick P. Edger, J. Chris Pires, M. Eric Schranz, Gerhard Leubner-Metzger, Stefan A. Rensing
BMC Genomics. 2019; 20: 95. Published online 2019 Jan 30. doi: 10.1186/s12864-019-5452-4
PMCID:
PMC6354389
AbstractArticlePDF–6.5M
6.
Exploring the History of Chloroplast Capture in Arabis Using Whole Chloroplast Genome Sequencing
Akira Kawabe, Hiroaki Nukii, Hazuka Y. Furihata
Int J Mol Sci. 2018 Feb; 19(2): 602. Published online 2018 Feb 18. doi: 10.3390/ijms19020602
PMCID:
PMC5855824
AbstractArticlePDF–2.9M
7.
A novel tetratricopeptide repeat protein, WHITE TO GREEN1, is required for early chloroplast development and affects RNA editing in chloroplasts
Fei Ma, Yingchun Hu, Yan Ju, Qianru Jiang, Zhijun Cheng, Quan Zhang, Sodmergen
J Exp Bot. 2017 Dec 16; 68(21-22): 5829–5843. Published online 2017 Nov 11. doi: 10.1093/jxb/erx383
PMCID:
PMC5854136
AbstractArticlePDF–7.9M
8.
An Arabidopsis introgression zone studied at high spatio-temporal resolution: interglacial and multiple genetic contact exemplified using whole nuclear and plastid genomes
Nora Hohmann, Marcus A. Koch
BMC Genomics. 2017; 18: 810. Published online 2017 Oct 23. doi: 10.1186/s12864-017-4220-6
Correction in:
BMC Genomics. 2018; 19: 245.
PMCID:
PMC5651623
AbstractArticlePDF–3.6M
9.
Acidophilic green algal genome provides insights into adaptation to an acidic environment
Shunsuke Hirooka, Yuu Hirose, Yu Kanesaki, Sumio Higuchi, Takayuki Fujiwara, Ryo Onuma, Atsuko Era, Ryudo Ohbayashi, Akihiro Uzuka, Hisayoshi Nozaki, Hirofumi Yoshikawa, Shin-ya Miyagishima
Proc Natl Acad Sci U S A. 2017 Sep 26; 114(39): E8304–E8313. Published online 2017 Sep 11. doi: 10.1073/pnas.1707072114
PMCID:
PMC5625915
AbstractArticlePDF–1.5M
10.
The complete chloroplast genome sequence of Aconitum coreanum and Aconitum carmichaelii and comparative analysis with other Aconitum species
Inkyu Park, Wook-jin Kim, Sungyu Yang, Sang-Min Yeo, Hulin Li, Byeong Cheol Moon
PLoS One. 2017; 12(9): e0184257. Published online 2017 Sep 1. doi: 10.1371/journal.pone.0184257
PMCID:
PMC5581188
AbstractArticlePDF–7.9M
11.
Monophyletic Origin and Evolution of the Largest Crucifer Genomes
Terezie Mandáková, Petra Hloušková, Dmitry A. German, Martin A. Lysak
Plant Physiol. 2017 Aug; 174(4): 2062–2071. Published online 2017 Jun 30. doi: 10.1104/pp.17.00457
PMCID:
PMC5543974
AbstractArticlePDF–2.0M
12.
A novel inversion in the chloroplast genome of marama (Tylosema esculentum)
Yunsoo Kim, Christopher Cullis
J Exp Bot. 2017 Apr 1; 68(8): 2065–2072. Published online 2017 Jan 31. doi: 10.1093/jxb/erw500
PMCID:
PMC5429017
AbstractArticlePDF–1.4M
13.
NOVOPlasty: de novo assembly of organelle genomes from whole genome data
Nicolas Dierckxsens, Patrick Mardulyn, Guillaume Smits
Nucleic Acids Res. 2017 Feb 28; 45(4): e18. Published online 2016 Oct 24. doi: 10.1093/nar/gkw955
PMCID:
PMC5389512
AbstractArticlePDF–2.1M
14.
Sequencing the extrachromosomal circular mobilome reveals retrotransposon activity in plants
Sophie Lanciano, Marie-Christine Carpentier, Christel Llauro, Edouard Jobet, Dagmara Robakowska-Hyzorek, Eric Lasserre, Alain Ghesquière, Olivier Panaud, Marie Mirouze
PLoS Genet. 2017 Feb; 13(2): e1006630. Published online 2017 Feb 17. doi: 10.1371/journal.pgen.1006630
PMCID:
PMC5338827
AbstractArticlePDF–1.7M
15.
SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations
Cornelia M. Hooper, Ian R. Castleden, Sandra K. Tanz, Nader Aryamanesh, A. Harvey Millar
Nucleic Acids Res. 2017 Jan 4; 45(Database issue): D1064–D1074. Published online 2016 Nov 24. doi: 10.1093/nar/gkw1041
PMCID:
PMC5210537
AbstractArticlePDF–4.7M
16.
A Comprehensive Software Suite for the Analysis of cDNAs
Kazuharu Arakawa, Haruo Suzuki, Kosuke Fujishima, Kenji Fujimoto, Sho Ueda, Motomu Matsui, Masaru Tomita
Genomics Proteomics Bioinformatics. 2005; 3(3): 179–188. Published online 2016 Nov 28. doi: 10.1016/S1672-0229(05)03023-8
PMCID:
PMC5172547
AbstractArticlePDF–541K
17.
A De Novo Genome Sequence Assembly of the Arabidopsis thaliana Accession Niederzenz-1 Displays Presence/Absence Variation and Strong Synteny
Boas Pucker, Daniela Holtgräwe, Thomas Rosleff Sörensen, Ralf Stracke, Prisca Viehöver, Bernd Weisshaar
PLoS One. 2016; 11(10): e0164321. Published online 2016 Oct 6. doi: 10.1371/journal.pone.0164321
PMCID:
PMC5053417
AbstractArticlePDF–1.9M
18.
Chloroplast Genome Sequence of Arabidopsis thaliana Accession Landsberg erecta, Assembled from Single-Molecule, Real-Time Sequencing Data
Kai Bernd Stadermann, Daniela Holtgräwe, Bernd Weisshaar
Genome Announc. 2016 Sep-Oct; 4(5): e00975-16. Published online 2016 Sep 22. doi: 10.1128/genomeA.00975-16
PMCID:
PMC5034127
AbstractArticlePDF–153K
19.
The radish genome and comprehensive gene expression profile of tuberous root formation and development
Yuki Mitsui, Michihiko Shimomura, Kenji Komatsu, Nobukazu Namiki, Mari Shibata-Hatta, Misaki Imai, Yuichi Katayose, Yoshiyuki Mukai, Hiroyuki Kanamori, Kanako Kurita, Tsutomu Kagami, Akihito Wakatsuki, Hajime Ohyanagi, Hiroshi Ikawa, Nobuhiro Minaka, Kunihiro Nakagawa, Yu Shiwa, Takuji Sasaki
Sci Rep. 2015; 5: 10835. Published online 2015 Jun 9. doi: 10.1038/srep10835
PMCID:
PMC4650646
AbstractArticlePDF–1.9M
20.
Variations in efficiency of plastidial RNA editing within ndh transcripts of perennial ryegrass (Lolium perenne) are not linked to differences in drought tolerance
Rob J. M. Van Den Bekerom, Philip J. Dix, Kerstin Diekmann, Susanne Barth
AoB Plants. 2013; 5: plt035. Published online 2013 Aug 13. doi: 10.1093/aobpla/plt035
PMCID:
PMC4455615
AbstractArticlePDF–1.0M

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