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Select item 16814811.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 13252002.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405

PMCID:: PMC1325200

Abstract Article PDF–204K

Select item 70670383.

Comparative genomic analysis identifies X-factor (haemin)-independent Haemophilus haemolyticus: a formal re-classification of 'Haemophilus intermedius'

Tegan M. Harris, Erin P. Price, Derek S. Sarovich, Niels Nørskov-Lauritsen, Jemima Beissbarth, Anne B. Chang, Heidi C. Smith-Vaughan

Microb Genom. 2020 Jan; 6(1): e000303. Published online 2019 Dec 20. doi: 10.1099/mgen.0.000303

PMCID:: PMC7067038

Abstract Article PDF–2.2M

Select item 70664634.

Absolute quantitation of microbes using 16S rRNA gene metabarcoding: A rapid normalization of relative abundances by quantitative PCR targeting a 16S rRNA gene spike‐in standard

Olivier Zemb, Caroline S. Achard, Jerome Hamelin, Marie‐Léa De Almeida, Béatrice Gabinaud, Laurent Cauquil, Lisanne M.G. Verschuren, Jean‐Jacques Godon

Microbiologyopen. 2020 Mar; 9(3): e977. Published online 2020 Jan 11. doi: 10.1002/mbo3.977

Correction in:: Microbiologyopen. 2022 Jun; 11(3): e1305.

PMCID:: PMC7066463

Abstract Article PDF–1.2M

Select item 70593635.

Analyses of energy metabolism and stress defence provide insights into Campylobacter concisus growth and pathogenicity

Melissa Yeow, Fang Liu, Rena Ma, Timothy J. Williams, Stephen M. Riordan, Li Zhang

Gut Pathog. 2020; 12: 13. Published online 2020 Mar 5. doi: 10.1186/s13099-020-00349-6

PMCID:: PMC7059363

Abstract Article PDF–1.1M

Select item 70591206.

Hierarchy in Hfq Chaperon Occupancy of Small RNA Targets Plays a Major Role in Their Regulation

Raya Faigenbaum-Romm, Avichai Reich, Yair E. Gatt, Meshi Barsheshet, Liron Argaman, Hanah Margalit

Cell Rep. 2020 Mar 3; 30(9): 3127–3138.e6. Published online 2020 Mar 3. doi: 10.1016/j.celrep.2020.02.016

PMCID:: PMC7059120

Abstract Article

Select item 70575087.

Oral colonisation by antimicrobial-resistant Gram-negative bacteria among long-term care facility residents: prevalence, risk factors, and molecular epidemiology

Mi Nguyen-Tra Le, Shizuo Kayama, Mineka Yoshikawa, Toshinori Hara, Seiya Kashiyama, Junzo Hisatsune, Keiko Tsuruda, Makoto Onodera, Hiroki Ohge, Kazuhiro Tsuga, Motoyuki Sugai

Antimicrob Resist Infect Control. 2020; 9: 45. Published online 2020 Mar 4. doi: 10.1186/s13756-020-0705-1

PMCID:: PMC7057508

Abstract Article PDF–1.2M

Select item 70559068.

A survey of extended-spectrum beta-lactamase-producing Enterobacteriaceae in urban wetlands in southwestern Nigeria as a step towards generating prevalence maps of antimicrobial resistance

Olawale Olufemi Adelowo, Odion Osebhahiemen Ikhimiukor, Camila Knecht, John Vollmers, Mudit Bhatia, Anne-Kirstin Kaster, Jochen A. Müller

PLoS One. 2020; 15(3): e0229451. Published online 2020 Mar 4. doi: 10.1371/journal.pone.0229451

PMCID:: PMC7055906

Abstract Article PDF–1.9M

Select item 70557979.

The SNAP hypothesis: Chromosomal rearrangements could emerge from positive Selection during Niche Adaptation

Gerrit Brandis, Diarmaid Hughes

PLoS Genet. 2020 Mar; 16(3): e1008615. Published online 2020 Mar 4. doi: 10.1371/journal.pgen.1008615

PMCID:: PMC7055797

Abstract Article PDF–1.5M

Select item 705438710.

Excessive Promoters as Silencers of Genes Horizontally Acquired by Escherichia coli

Aleksandr Bykov, Olga Glazunova, Olga Alikina, Natalia Sukharicheva, Irina Masulis, Konstantin Shavkunov, Olga Ozoline

Front Mol Biosci. 2020; 7: 28. Published online 2020 Feb 26. doi: 10.3389/fmolb.2020.00028

PMCID:: PMC7054387

Abstract Article PDF–1.7M

Select item 704683311.

Genome-Based Analysis of Extended-Spectrum β-Lactamase-Producing Escherichia coli in the Aquatic Environment and Nile Perch (Lates niloticus) of Lake Victoria, Tanzania

Zebedayo Baniga, Yaovi M. Gildas Hounmanou, Egle Kudirkiene, Lughano J. M. Kusiluka, Robinson H. Mdegela, Anders Dalsgaard

Front Microbiol. 2020; 11: 108. Published online 2020 Feb 21. doi: 10.3389/fmicb.2020.00108

PMCID:: PMC7046833

Abstract Article PDF–873K

Select item 704539212.

Laboratory Evolution Experiments Help Identify a Predominant Region of Constitutive Stable DNA Replication Initiation

Reshma T. Veetil, Nitish Malhotra, Akshara Dubey, Aswin Sai Narain Seshasayee

mSphere. 2020 Jan-Feb; 5(1): e00939-19. Published online 2020 Feb 26. doi: 10.1128/mSphere.00939-19

PMCID:: PMC7045392

Abstract Article PDF–2.1M

Select item 704373913.

First Indian report on genome-wide comparison of multidrug-resistant Escherichia coli from blood stream infections

Naveen Kumar Devanga Ragupathi, Balaji Veeraraghavan, Dhiviya Prabaa Muthuirulandi Sethuvel, Shalini Anandan, Karthick Vasudevan, Ayyan Raj Neeravi, Jones Lionel Kumar Daniel, Sowmya Sathyendra, Ramya Iyadurai, Ankur Mutreja

PLoS One. 2020; 15(2): e0220428. Published online 2020 Feb 26. doi: 10.1371/journal.pone.0220428

PMCID:: PMC7043739

Abstract Article PDF–1.8M

Select item 703894314.

The conserved 3′ UTR-derived small RNA NarS mediates mRNA crossregulation during nitrate respiration

Chuan Wang, Yanjie Chao, Gianluca Matera, Qian Gao, Jörg Vogel

Nucleic Acids Res. 2020 Feb 28; 48(4): 2126–2143. Published online 2019 Dec 21. doi: 10.1093/nar/gkz1168

PMCID:: PMC7038943

Abstract Article PDF–8.3M

Select item 702664815.

High intrinsic hydrolytic activity of cyanobacterial RNA polymerase compensates for the absence of transcription proofreading factors

Amber Riaz-Bradley, Katherine James, Yulia Yuzenkova

Nucleic Acids Res. 2020 Feb 20; 48(3): 1341–1352. Published online 2019 Dec 16. doi: 10.1093/nar/gkz1130

PMCID:: PMC7026648

Abstract Article PDF–2.6M

Select item 700504016.

Characterization and potential mechanisms of highly antibiotic tolerant VBNC Escherichia coli induced by low level chlorination

Chengsong Ye, Huirong Lin, Menglu Zhang, Sheng Chen, Xin Yu

Sci Rep. 2020; 10: 1957. Published online 2020 Feb 6. doi: 10.1038/s41598-020-58106-3

PMCID:: PMC7005040

Abstract Article PDF–1.5M

Select item 699352417.

Simulating metagenomic stable isotope probing datasets with MetaSIPSim

Samuel E. Barnett, Daniel H. Buckley

BMC Bioinformatics. 2020; 21: 37. Published online 2020 Jan 30. doi: 10.1186/s12859-020-3372-6

PMCID:: PMC6993524

Abstract Article PDF–1.7M

Select item 698042418.

RNAmountAlign: Efficient software for local, global, semiglobal pairwise and multiple RNA sequence/structure alignment

Amir H. Bayegan, Peter Clote

PLoS One. 2020; 15(1): e0227177. Published online 2020 Jan 24. doi: 10.1371/journal.pone.0227177

PMCID:: PMC6980424

Abstract Article PDF–3.2M

Select item 697456719.

RNA G-Quadruplex Structures Mediate Gene Regulation in Bacteria

Xiaolong Shao, Weitong Zhang, Mubarak Ishaq Umar, Hei Yuen Wong, Zijing Seng, Yingpeng Xie, Yingchao Zhang, Liang Yang, Chun Kit Kwok, Xin Deng

mBio. 2020 Jan-Feb; 11(1): e02926-19. Published online 2020 Jan 21. doi: 10.1128/mBio.02926-19

PMCID:: PMC6974567

Abstract Article PDF–2.0M

Select item 697029520.

Stepwise evolution and convergent recombination underlie the global dissemination of carbapenemase-producing Escherichia coli

Rafael Patiño-Navarrete, Isabelle Rosinski-Chupin, Nicolas Cabanel, Lauraine Gauthier, Julie Takissian, Jean-Yves Madec, Monzer Hamze, Remy A. Bonnin, Thierry Naas, Philippe Glaser

Genome Med. 2020; 12: 10. Published online 2020 Jan 20. doi: 10.1186/s13073-019-0699-6