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Items: 1 to 20 of 476

1.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
2.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
3.
CRISPR/Cas9 recombineering‐mediated deep mutational scanning of essential genes in Escherichia coli
Alaksh Choudhury, Jacob A Fenster, Reilly G Fankhauser, Joel L Kaar, Olivier Tenaillon, Ryan T Gill
Mol Syst Biol. 2020 Mar; 16(3): e9265. Published online 2020 Mar 16. doi: 10.15252/msb.20199265
PMCID:
PMC7073797
AbstractArticlePDF–3.0M
4.
Rules and Exceptions: The Role of Chromosomal ParB in DNA Segregation and Other Cellular Processes
Adam Kawalek, Pawel Wawrzyniak, Aneta Agnieszka Bartosik, Grazyna Jagura-Burdzy
Microorganisms. 2020 Jan; 8(1): 0. Published online 2020 Jan 11. doi: 10.3390/microorganisms8010105
PMCID:
PMC7022226
AbstractArticlePDF–2.8M
5.
In vitro self-replication and multicistronic expression of large synthetic genomes
K. Libicher, R. Hornberger, M. Heymann, H. Mutschler
Nat Commun. 2020; 11: 904. Published online 2020 Feb 14. doi: 10.1038/s41467-020-14694-2
PMCID:
PMC7021806
AbstractArticlePDF–1.6M
6.
A stochastic model for simulating ribosome kinetics in vivo
Eric Charles Dykeman
PLoS Comput Biol. 2020 Feb; 16(2): e1007618. Published online 2020 Feb 12. doi: 10.1371/journal.pcbi.1007618
PMCID:
PMC7015319
AbstractArticlePDF–2.4M
7.
Figure 1 Theory Meets Figure 2 Experiments in the Study of Gene Expression
Rob Phillips, Nathan M. Belliveau, Griffin Chure, Hernan G. Garcia, Manuel Razo-Mejia, Clarissa Scholes
Annu Rev Biophys. Author manuscript; available in PMC 2020 Feb 5.
Published in final edited form as: Annu Rev Biophys. 2019 May 6; 48: 121–163. doi: 10.1146/annurev-biophys-052118-115525
PMCID:
PMC7001876
AbstractArticlePDF–2.1M
8.
Outer membrane protein A (OmpA) of extraintestinal pathogenic Escherichia coli
Daniel W. Nielsen, Nicole Ricker, Nicolle L. Barbieri, Heather K. Allen, Lisa K. Nolan, Catherine M. Logue
BMC Res Notes. 2020; 13: 51. Published online 2020 Jan 31. doi: 10.1186/s13104-020-4917-5
PMCID:
PMC6995065
AbstractArticlePDF–1.9M
9.
Computational evolution of an RNA-binding protein towards enhanced oxidized-RNA binding
Juan C. Gonzalez-Rivera, Asuka A. Orr, Sean M. Engels, Joseph M. Jakubowski, Mark W. Sherman, Katherine N. O'Connor, Tomas Matteson, Brendan C. Woodcock, Lydia M. Contreras, Phanourios Tamamis
Comput Struct Biotechnol J. 2020; 18: 137–152. Published online 2019 Dec 27. doi: 10.1016/j.csbj.2019.12.003
PMCID:
PMC6965710
AbstractArticlePDF–4.3M
10.
IS26 Family Members IS257 and IS1216 Also Form Cointegrates by Copy-In and Targeted Conservative Routes
Christopher J. Harmer, Ruth M. Hall
mSphere. 2020 Jan-Feb; 5(1): e00811-19. Published online 2020 Jan 8. doi: 10.1128/mSphere.00811-19
PMCID:
PMC6952201
AbstractArticlePDF–578K
11.
Transcript degradation and codon usage regulate gene expression in a lytic phage
Benjamin R Jack, Daniel R Boutz, Matthew L Paff, Bartram L Smith, Claus O Wilke
Virus Evol. 2019 Jul; 5(2): vez055. Published online 2019 Dec 31. doi: 10.1093/ve/vez055
PMCID:
PMC6938266
AbstractArticlePDF–1.0M
12.
Characteristics of a Colistin-Resistant Escherichia coli ST695 Harboring the Chromosomally-Encoded mcr-1 Gene
Zhong Peng, Zizhe Hu, Zugang Li, Xiaosong Li, Chaoying Jia, Xiaoxue Zhang, Bin Wu, Huanchun Chen, Xiangru Wang
Microorganisms. 2019 Nov; 7(11): 558. Published online 2019 Nov 12. doi: 10.3390/microorganisms7110558
PMCID:
PMC6920969
AbstractArticlePDF–1.8M
13.
Characteristics of Carbapenem-Resistant and Colistin-Resistant Escherichia coli Co-Producing NDM-1 and MCR-1 from Pig Farms in China
Zhong Peng, Xiaosong Li, Zizhe Hu, Zugang Li, Yujin Lv, Minggang Lei, Bin Wu, Huanchun Chen, Xiangru Wang
Microorganisms. 2019 Nov; 7(11): 482. Published online 2019 Oct 23. doi: 10.3390/microorganisms7110482
PMCID:
PMC6920953
AbstractArticlePDF–1.6M
14.
Reassessing the Role of the Type II MqsRA Toxin-Antitoxin System in Stress Response and Biofilm Formation: mqsA Is Transcriptionally Uncoupled from mqsR
Nathan Fraikin, Clothilde J. Rousseau, Nathalie Goeders, Laurence Van Melderen
mBio. 2019 Nov-Dec; 10(6): e02678-19. Published online 2019 Dec 17. doi: 10.1128/mBio.02678-19
PMCID:
PMC6918082
AbstractArticlePDF–960K
15.
Strain improvement of Escherichia coli K-12 for recombinant production of deuterated proteins
Vinardas Kelpšas, Claes von Wachenfeldt
Sci Rep. 2019; 9: 17694. Published online 2019 Nov 27. doi: 10.1038/s41598-019-54196-w
PMCID:
PMC6881287
AbstractArticlePDF–2.1M
16.
Delayed Pulmonary Apoptosis of Diet-Induced Obesity Mice following Escherichia coli Infection through the Mitochondrial Apoptotic Pathway
Fengyuan Wang, Zhicai Zuo, Zhuangzhi Yang, Kejie Chen, Jing Fang, Hengmin Cui, Gang Shu, Yi Zhou, Yi Geng, Ping Ouyang
Oxid Med Cell Longev. 2019; 2019: 1968539. Published online 2019 Oct 22. doi: 10.1155/2019/1968539
PMCID:
PMC6854188
AbstractArticlePDF–1.8M
17.
Identification of Genes Essential for Antibiotic-Induced Up-Regulation of Plasmid-Transfer-Genes in Cephalosporin Resistant Escherichia coli
Gang Liu, John Elmerdahl Olsen, Line Elnif Thomsen
Front Microbiol. 2019; 10: 2203. Published online 2019 Sep 24. doi: 10.3389/fmicb.2019.02203
PMCID:
PMC6768964
AbstractArticlePDF–1.1M
18.
Temperature Response of Planktonic Microbiota in Remote Alpine Lakes
Yiming Jiang, Haiying Huang, Tianli Ma, Jinlong Ru, Stephan Blank, Rainer Kurmayer, Li Deng
Front Microbiol. 2019; 10: 1714. Published online 2019 Jul 31. doi: 10.3389/fmicb.2019.01714
PMCID:
PMC6685043
AbstractArticlePDF–4.4M
19.
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
Steven M. Lakin, Alan Kuhnle, Bahar Alipanahi, Noelle R. Noyes, Chris Dean, Martin Muggli, Rob Raymond, Zaid Abdo, Mattia Prosperi, Keith E. Belk, Paul S. Morley, Christina Boucher
Commun Biol. 2019; 2: 294. Published online 2019 Aug 6. doi: 10.1038/s42003-019-0545-9
PMCID:
PMC6684577
AbstractArticlePDF–1.1M
20.
The rsmA‐like gene rsmAXoo of Xanthomonas oryzae pv. oryzae regulates bacterial virulence and production of diffusible signal factor
PEI‐LIANG ZHU, SHUAI ZHAO, JI‐LIANG TANG, JIA‐XUN FENG
Mol Plant Pathol. 2011 Apr; 12(3): 227–237. Published online 2010 Oct 1. doi: 10.1111/j.1364-3703.2010.00661.x
PMCID:
PMC6640276
AbstractArticlePDF–760K

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