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Links from Nucleotide

Items: 15

1.
Genome sequence of Oceanobacillus iheyensis isolated from the Iheya Ridge and its unexpected adaptive capabilities to extreme environments
Hideto Takami, Yoshihiro Takaki, Ikuo Uchiyama
Nucleic Acids Res. 2002 Sep 15; 30(18): 3927–3935. doi: 10.1093/nar/gkf526
PMCID:
PMC137110
AbstractArticlePDF–573K
2.
RNA 3D structure prediction guided by independent folding of homologous sequences
Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. Bujnicki
BMC Bioinformatics. 2019; 20: 512. Published online 2019 Oct 22. doi: 10.1186/s12859-019-3120-y
PMCID:
PMC6806525
AbstractArticlePDF–2.3M
3.
Practical implications of erythromycin resistance gene diversity on surveillance and monitoring of resistance
Jinlyung Choi, Elizabeth L Rieke, Thomas B Moorman, Michelle L Soupir, Heather K Allen, Schuyler D Smith, Adina Howe
FEMS Microbiol Ecol. 2018 Apr; 94(4): fiy006. Published online 2018 Jan 15. doi: 10.1093/femsec/fiy006
PMCID:
PMC5939627
AbstractArticlePDF–819K
4.
Genome Diversity of Spore-Forming Firmicutes
Michael Y. Galperin
Microbiol Spectr. Author manuscript; available in PMC 2015 Jan 26.
Published in final edited form as: Microbiol Spectr. 2013 Dec; 1(2): TBS-0015-2012. Published online 2013 Dec 27. doi: 10.1128/microbiolspectrum.TBS-0015-2012
PMCID:
PMC4306282
AbstractArticlePDF–379K
5.
Halophilic bacteria are colonizing the exhibition areas of the Capuchin Catacombs in Palermo, Italy
G. Piñar, L. Kraková, D. Pangallo, D. Piombino-Mascali, F. Maixner, A. Zink, K. Sterflinger
Extremophiles. 2014; 18(4): 677–691. Published online 2014 May 27. doi: 10.1007/s00792-014-0649-6
PMCID:
PMC4065341
AbstractArticlePDF–1.0M
6.
Characterization of a complex context containing mecA but lacking genes encoding cassette chromosome recombinases in Staphylococcus haemolyticus
Zhiyong Zong
BMC Microbiol. 2013; 13: 64. Published online 2013 Mar 22. doi: 10.1186/1471-2180-13-64
PMCID:
PMC3637587
AbstractArticlePDF–350K
7.
Importance of uncharged polar residues and proline in the proximal two-thirds (Pro107–Ser128) of the highly conserved region of mouse ileal Na+-dependent bile acid transporter, Slc10a2, in transport activity and cellular expression
Tohru Saeki, Kosuke Sato, Shiho Ito, Keisuke Ikeda, Ryuhei Kanamoto
BMC Physiol. 2013; 13: 4. Published online 2013 Feb 4. doi: 10.1186/1472-6793-13-4
PMCID:
PMC3570448
AbstractArticlePDF–1.1M
8.
Maximum expected accuracy structural neighbors of an RNA secondary structure
Peter Clote, Feng Lou, William A Lorenz
BMC Bioinformatics. 2012; 13(Suppl 5): S6. Published online 2012 Apr 12. doi: 10.1186/1471-2105-13-S5-S6
PMCID:
PMC3358666
AbstractArticlePDF–2.1M
9.
Diversity and strength of internal outward-oriented promoters in group IIC-attC introns
Grégory Léon, Cecilia Quiroga, Daniela Centrón, Paul H. Roy
Nucleic Acids Res. 2010 Dec; 38(22): 8196–8207. Published online 2010 Aug 16. doi: 10.1093/nar/gkq709
PMCID:
PMC3001079
AbstractArticlePDF–3.2M
10.
F1F0-ATP synthases of alkaliphilic bacteria: lessons from their adaptations
David B. Hicks, Jun Liu, Makoto Fujisawa, Terry A. Krulwich
Biochim Biophys Acta. Author manuscript; available in PMC 2011 Aug 1.
Published in final edited form as: Biochim Biophys Acta. 2010 Aug; 1797(8): 1362–1377. Published online 2010 Mar 1. doi: 10.1016/j.bbabio.2010.02.028
PMCID:
PMC2890045
AbstractArticlePDF–1.0M
11.
Reliability and applications of statistical methods based on oligonucleotide frequencies in bacterial and archaeal genomes
Jon Bohlin, Eystein Skjerve, David W Ussery
BMC Genomics. 2008; 9: 104. Published online 2008 Feb 28. doi: 10.1186/1471-2164-9-104
PMCID:
PMC2289816
AbstractArticlePDF–753K
12.
Widespread Occurrence and Genomic Context of Unusually Small Polyketide Synthase Genes in Microbial Consortia Associated with Marine Sponges
Lars Fieseler, Ute Hentschel, Lubomir Grozdanov, Andreas Schirmer, Gaiping Wen, Matthias Platzer, Siniša Hrvatin, Daniel Butzke, Katrin Zimmermann, Jörn Piel
Appl Environ Microbiol. 2007 Apr; 73(7): 2144–2155. Published online 2007 Feb 9. doi: 10.1128/AEM.02260-06
PMCID:
PMC1855645
AbstractArticlePDF–541K
13.
Isolation and Characterization of Bacteria Capable of Tolerating the Extreme Conditions of Clean Room Environments
Myron T. La Duc, Anne Dekas, Shariff Osman, Christine Moissl, David Newcombe, Kasthuri Venkateswaran
Appl Environ Microbiol. 2007 Apr; 73(8): 2600–2611. Published online 2007 Feb 16. doi: 10.1128/AEM.03007-06
PMCID:
PMC1855582
AbstractArticlePDF–168K
14.
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes
Stéphane Cruveiller, Jérôme Le Saux, David Vallenet, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue
Nucleic Acids Res. 2005 Jul 1; 33(Web Server issue): W471–W479. Published online 2005 Jun 27. doi: 10.1093/nar/gki498
PMCID:
PMC1160258
AbstractArticlePDF–375K
15.
Variation in the strength of selected codon usage bias among bacteria
Paul M. Sharp, Elizabeth Bailes, Russell J. Grocock, John F. Peden, R. Elizabeth Sockett
Nucleic Acids Res. 2005; 33(4): 1141–1153. Published online 2005 Feb 23. doi: 10.1093/nar/gki242
PMCID:
PMC549432
AbstractArticlePDF–284K

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